{ "resourceType" : "ConceptMap", "id" : "SampleTypeSCTtoIGENE", "language" : "en", "text" : { "status" : "generated", "div" : "

Generated Narrative: ConceptMap SampleTypeSCTtoIGENE

Mapping from Specimen Type to (not specified)


Mapping from http://snomed.info/sct|http://snomed.info/sct/83821000000107 to iGene Codes

Source Concept DetailsRelationshipTarget Concept Details
Codes from http://snomed.info/sct|http://snomed.info/sct/83821000000107Codes from iGene Codes
119297000Blood specimenis equivalent toSAMPLE: BL
122556008Cord blood specimenis equivalent toSAMPLE: BL
122575003Urine specimenis equivalent toSAMPLE: Urine
441479001Fresh tissue specimenis equivalent toSAMPLE: TC
119342007Saliva specimenis equivalent toSAMPLE: SALIVA
309147000Thyroid cyst fluid sampleis equivalent toSAMPLE: Cystic fluid
258450006Cerebrospinal fluid sampleis equivalent toSAMPLE: CSF
119373006Amniotic fluid specimenis equivalent toSAMPLE: AF
309201001Ascitic fluid sampleis equivalent toSAMPLE: Ascitic fluid
258580003Whole blood sampleis equivalent toSAMPLE: BL
737357006Foetal blood specimenis equivalent toSAMPLE: BL
122555007Venous blood specimenis equivalent toSAMPLE: BL
440500007Blood spot specimenis equivalent toSAMPLE: BSP
119359002Bone marrow specimenis equivalent toSAMPLE: BM
733104004Buccal swabis equivalent toSAMPLE: BS
258565009Chorionic villi sampleis equivalent toSAMPLE: CVB Chorionic
702451000Cultured cells (substance)is equivalent toSAMPLE: Cult Cells
441652008Formalin-fixed paraffin-embedded tissue specimenis related toSAMPLE: FFPE-SL
is related toSAMPLE: FFPE-SH
is related toSAMPLE: FFPE-PCS
122571007Pericardial fluid specimenis equivalent toSAMPLE: PERICARDIAL FLUID
418564007Pleural fluid specimen (specimen)is equivalent toPl F
" }, "url" : "https://fhir.nwgenomics.nhs.uk/ConceptMap/SampleTypeSCTtoIGENE", "version" : "2.1.4", "name" : "SampleTypeSCTtoIGENE", "title" : "Sample Type (SNOMED) to iGene Specimen Type", "status" : "draft", "experimental" : false, "date" : "2026-07-24T08:52:06+00:00", "publisher" : "NHS North West Genomics", "contact" : [{ "telecom" : [{ "system" : "url", "value" : "https://www.nwgenomics.nhs.uk/contact-us" }] }], "description" : "Sample Type (SNOMED) to iGene Specimen Type", "jurisdiction" : [{ "coding" : [{ "system" : "urn:iso:std:iso:3166", "code" : "GB", "display" : "United Kingdom of Great Britain and Northern Ireland" }] }], "sourceCanonical" : "https://fhir.nwgenomics.nhs.uk/ValueSet/specimen-type", "group" : [{ "source" : "http://snomed.info/sct", "sourceVersion" : "http://snomed.info/sct/83821000000107", "target" : "https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE", "element" : [{ "code" : "119297000", "target" : [{ "code" : "SAMPLE: BL", "equivalence" : "equivalent" }] }, { "code" : "122556008", "target" : [{ "code" : "SAMPLE: BL", "equivalence" : "equivalent" }] }, { "code" : "122575003", "target" : [{ "code" : "SAMPLE: Urine", "equivalence" : "equivalent" }] }, { "code" : "441479001", "target" : [{ "code" : "SAMPLE: TC", "equivalence" : "equivalent" }] }, { "code" : "119342007", "target" : [{ "code" : "SAMPLE: SALIVA", "equivalence" : "equivalent" }] }, { "code" : "309147000", "target" : [{ "code" : "SAMPLE: Cystic fluid", "equivalence" : "equivalent" }] }, { "code" : "258450006", "target" : [{ "code" : "SAMPLE: CSF", "equivalence" : "equivalent" }] }, { "code" : "119373006", "target" : [{ "code" : "SAMPLE: AF", "equivalence" : "equivalent" }] }, { "code" : "309201001", "target" : [{ "code" : "SAMPLE: Ascitic fluid", "equivalence" : "equivalent" }] }, { "code" : "258580003", "target" : [{ "code" : "SAMPLE: BL", "equivalence" : "equivalent" }] }, { "code" : "737357006", "target" : [{ "code" : "SAMPLE: BL", "equivalence" : "equivalent" }] }, { "code" : "122555007", "target" : [{ "code" : "SAMPLE: BL", "equivalence" : "equivalent" }] }, { "code" : "440500007", "target" : [{ "code" : "SAMPLE: BSP", "equivalence" : "equivalent" }] }, { "code" : "119359002", "target" : [{ "code" : "SAMPLE: BM", "equivalence" : "equivalent" }] }, { "code" : "733104004", "target" : [{ "code" : "SAMPLE: BS", "equivalence" : "equivalent" }] }, { "code" : "258565009", "target" : [{ "code" : "SAMPLE: CVB Chorionic", "equivalence" : "equivalent" }] }, { "code" : "702451000", "target" : [{ "code" : "SAMPLE: Cult Cells", "equivalence" : "equivalent" }] }, { "code" : "441652008", "target" : [{ "code" : "SAMPLE: FFPE-SL", "equivalence" : "relatedto" }, { "code" : "SAMPLE: FFPE-SH", "equivalence" : "relatedto" }, { "code" : "SAMPLE: FFPE-PCS", "equivalence" : "relatedto" }] }, { "code" : "122571007", "target" : [{ "code" : "SAMPLE: PERICARDIAL FLUID", "equivalence" : "equivalent" }] }, { "code" : "418564007", "target" : [{ "code" : "Pl F", "equivalence" : "equivalent" }] }] }] }