{ "resourceType" : "Questionnaire", "id" : "iGeneWorkOrderExport", "meta" : { "profile" : ["https://fhir.nwgenomics.nhs.uk/StructureDefinition/NWQuestionnaire"] }, "language" : "en", "text" : { "status" : "extensions", "div" : "

Generated Narrative: Questionnaire iGeneWorkOrderExport

Profile: Questionnaire

\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n
LinkIDTextCardinalityTypeDescription & Constraints\"doco\"
\".\"\".\" Represents the flat-file shape of `StarLIMSSampleData.csv`, iGene's daily CSV export\nof work orders sub-contracted to StarLIMS (the Liverpool GLH satellite LIMS) - see\n[StarLIMS / iGene Integration](starLIMS.html#subcontracted-orders). The same export\nshape/pattern is reused by the [OMICS DSS Result\nIntegration](reportable-variants.html) use case for DLIMS work order metadata (see\nthat page's Future Process) - one row per sub-contracted test, named for iGene (the\ncommon source) rather than StarLIMS specifically, since it isn't StarLIMS-specific.\n\nEach item's `linkId` is the literal CSV column header, `type` the FHIR datatype the\ncolumn's values coerce to, and `definition` the FHIR field the column populates once\nimported - many of these reuse the exact same field as the equivalent item already\ndefined on [Genomic Test Order](Questionnaire-GenomicTestOrder.html), since a\nsub-contracted work order carries the same underlying data as any other order. See\n[StarLIMS / iGene Integration - Work Order CSV Export from\niGene](starLIMS.html#work-order-csv-export-from-igene) for a simple description of each\ncolumn plus its FHIR mapping (also reused, unchanged, by [OMICS DSS Result\nIntegration](reportable-variants.html#work-order-csv-from-igene)), and\n[StarLIMSSampleData.csv](https://github.com/nw-gmsa/Testing/blob/main/Input/StarLIMSSampleData.csv)\nfor the source file this was extracted from.\n\nUnlike the Ask At Order Entry Questionnaires elsewhere in this IG, this is not a\n`derivedFrom`/`extends` Questionnaire - it documents an existing system-to-system CSV\nexport shape, not a human-facing order-entry form, so items aren't nested under the\nsame Patient/HealthcareProfessional/TestRequest/Specimen groups `derivedFrom` would\nimply; they're grouped the same way only because that's how the source CSV's columns\nnaturally cluster.Questionnairehttps://fhir.nwgenomics.nhs.uk/Questionnaire/iGeneWorkOrderExport#2.2.0
\".\"\".\"\".\" PatientPatient0..1groupDefinition: Patient
\".\"\".\"\".\"\".\" PatientAccessionIdentifierPatientAccessionIdentifier0..1stringDefinition: Patient.identifier:PatientIdentifier
\".\"\".\"\".\"\".\"\".\" PatientAccessionIdentifier-designNoteiGene's own internal patient accession number, distinct from NHSNumber/HospitalNumber - system/assigner not yet confirmed.0..1display
\".\"\".\"\".\"\".\" NHSNumberNHSNumber0..1stringDefinition: Patient.identifier:nhsNumber
\".\"\".\"\".\"\".\" PatientGivenNamePatientGivenName0..1stringDefinition: Patient.name.given
\".\"\".\"\".\"\".\" PatientFamilyNamePatientFamilyName0..1stringDefinition: Patient.name.family
\".\"\".\"\".\"\".\" DateOfBirthDateOfBirth0..1dateDefinition: Patient.birthDate
\".\"\".\"\".\"\".\" AdministrativeSexAdministrativeSex0..1stringDefinition: Patient.gender
\".\"\".\"\".\"\".\" PostCodePostCode0..1stringDefinition: Patient.address.postalCode
\".\"\".\"\".\"\".\" HospitalNumberHospitalNumber0..1stringDefinition: Patient.identifier:MedicalRecordNumber
\".\"\".\"\".\" HealthcareProfessionalHealthcare Professional0..1groupDefinition: PractitionerRole
\".\"\".\"\".\"\".\" OrderingProviderIdentifierOrderingProviderIdentifier0..1stringDefinition: PractitionerRole.practitioner.identifier.value
\".\"\".\"\".\"\".\" OrderingProviderNameOrderingProviderName0..1stringDefinition: PractitionerRole.practitioner.display
\".\"\".\"\".\"\".\" RequestingOrganisationCodeRequestingOrganisationCode0..1stringDefinition: PractitionerRole.organization.identifier.value
\".\"\".\"\".\"\".\" RequestingOrganisationNameRequestingOrganisationName0..1stringDefinition: PractitionerRole.organization.display
\".\"\".\"\".\" TestRequestTest Request0..1groupDefinition: ServiceRequest
\".\"\".\"\".\"\".\" HospitalSpellIdentifierHospitalSpellIdentifier0..1stringDefinition: ServiceRequest.encounter.identifier
\".\"\".\"\".\"\".\"\".\" HospitalSpellIdentifier-designNoteCoded with the HospitalProviderSpellIdentifier extension - same pattern as Visit.partOf.identifier and HospitalSpell.identifier[HospitalSpellIdentifier] elsewhere in this IG.0..1display
\".\"\".\"\".\"\".\" PlacerOrderNumberPlacerOrderNumber0..1stringDefinition: ServiceRequest.identifier:OrderIdentifier
\".\"\".\"\".\"\".\"\".\" PlacerOrderNumber-designNoteidentifier.type = PLAC (v2-0203), the same OrderIdentifier slice FillerOrderNumber below uses with type = FILL.0..1display
\".\"\".\"\".\"\".\" FillerOrderNumberFillerOrderNumber0..1stringDefinition: ServiceRequest.identifier:OrderIdentifier
\".\"\".\"\".\"\".\"\".\" FillerOrderNumber-designNoteidentifier.type = FILL (v2-0203).0..1display
\".\"\".\"\".\"\".\" TestAccessionIdentifierTestAccessionIdentifier0..1stringDefinition: ServiceRequest.identifier
\".\"\".\"\".\"\".\"\".\" TestAccessionIdentifier-designNoteA further, test-level iGene identifier distinct from both the Placer and Filler Order Number slices above - exact identifier.type/system not yet confirmed.0..1display
\".\"\".\"\".\"\".\" TestOrderDateTestOrderDate0..1dateTimeDefinition: ServiceRequest.authoredOn
\".\"\".\"\".\"\".\" NGTDTestCodeNGTDTestCode0..1stringDefinition: ServiceRequest.code
\".\"\".\"\".\"\".\" NGTDTestNameNGTDTestName0..1stringDefinition: ServiceRequest.code.coding.display
\".\"\".\"\".\"\".\" OrderStatusOrderStatus0..1stringDefinition: ServiceRequest.status
\".\"\".\"\".\"\".\" SpecimenDispatchDateSpecimenDispatchDate0..1dateTimeDefinition: Observation.valueDateTime
\".\"\".\"\".\"\".\"\".\" SpecimenDispatchDate-designNoteSame Ask At Order Entry pattern as GenomicTestOrder's NOS/SampleSent item (Observation referenced from ServiceRequest.supportingInfo).0..1display
\".\"\".\"\".\"\".\" DatasetTargetOrganisationDatasetTargetOrganisation0..1stringDefinition: Observation.valueString
\".\"\".\"\".\"\".\"\".\" DatasetTargetOrganisation-designNoteSame Ask At Order Entry pattern as GenomicTestOrder's NOS/SampleSentTo item (Observation referenced from ServiceRequest.supportingInfo).0..1display
\".\"\".\"\".\"\".\" ClinicalDetailsClinicalDetails0..1stringDefinition: ServiceRequest.note
\".\"\".\"\".\" SpecimenSpecimen/Biopsy0..1groupDefinition: Specimen
\".\"\".\"\".\"\".\" SpecimenAccessionIdentifierSpecimenAccessionIdentifier0..1stringDefinition: Specimen.accessionIdentifier
\".\"\".\"\".\"\".\" SpecimenTypeDescriptionSpecimenTypeDescription0..1stringDefinition: Specimen.type.coding.display
\".\"\".\"\".\"\".\" SpecimenTakenDateTimeSpecimenTakenDateTime0..1dateTimeDefinition: Specimen.collection.collectedDateTime
\".\"\".\"\".\"\".\" ShipmentTrackingNumberShipmentTrackingNumber0..1stringDefinition: Specimen.identifier:ShipmentTrackingNumber

\"doco\" Documentation for this format
" }, "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/artifact-versionAlgorithm", "valueCoding" : { "system" : "http://hl7.org/fhir/version-algorithm", "code" : "semver" } }], "url" : "https://fhir.nwgenomics.nhs.uk/Questionnaire/iGeneWorkOrderExport", "version" : "2.2.0", "title" : "iGene Work Order Export (CSV)", "status" : "draft", "date" : "2026-09-20T05:53:36+00:00", "publisher" : "NHS North West Genomics", "contact" : [{ "telecom" : [{ "system" : "url", "value" : "https://www.nwgenomics.nhs.uk/contact-us" }] }], "description" : "Represents the flat-file shape of `StarLIMSSampleData.csv`, iGene's daily CSV export\nof work orders sub-contracted to StarLIMS (the Liverpool GLH satellite LIMS) - see\n[StarLIMS / iGene Integration](starLIMS.html#subcontracted-orders). The same export\nshape/pattern is reused by the [OMICS DSS Result\nIntegration](reportable-variants.html) use case for DLIMS work order metadata (see\nthat page's Future Process) - one row per sub-contracted test, named for iGene (the\ncommon source) rather than StarLIMS specifically, since it isn't StarLIMS-specific.\n\nEach item's `linkId` is the literal CSV column header, `type` the FHIR datatype the\ncolumn's values coerce to, and `definition` the FHIR field the column populates once\nimported - many of these reuse the exact same field as the equivalent item already\ndefined on [Genomic Test Order](Questionnaire-GenomicTestOrder.html), since a\nsub-contracted work order carries the same underlying data as any other order. See\n[StarLIMS / iGene Integration - Work Order CSV Export from\niGene](starLIMS.html#work-order-csv-export-from-igene) for a simple description of each\ncolumn plus its FHIR mapping (also reused, unchanged, by [OMICS DSS Result\nIntegration](reportable-variants.html#work-order-csv-from-igene)), and\n[StarLIMSSampleData.csv](https://github.com/nw-gmsa/Testing/blob/main/Input/StarLIMSSampleData.csv)\nfor the source file this was extracted from.\n\nUnlike the Ask At Order Entry Questionnaires elsewhere in this IG, this is not a\n`derivedFrom`/`extends` Questionnaire - it documents an existing system-to-system CSV\nexport shape, not a human-facing order-entry form, so items aren't nested under the\nsame Patient/HealthcareProfessional/TestRequest/Specimen groups `derivedFrom` would\nimply; they're grouped the same way only because that's how the source CSV's columns\nnaturally cluster.", "jurisdiction" : [{ "coding" : [{ "system" : "urn:iso:std:iso:3166", "code" : "GB", "display" : "United Kingdom of Great Britain and Northern Ireland" }] }], "item" : [{ "linkId" : "Patient", "definition" : "http://hl7.org/fhir/StructureDefinition/Patient#Patient", "text" : "Patient", "type" : "group", "item" : [{ "linkId" : "PatientAccessionIdentifier", "definition" : "http://hl7.org/fhir/StructureDefinition/Patient#Patient.identifier:PatientIdentifier", "text" : "PatientAccessionIdentifier", "type" : "string", "item" : [{ "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl", "valueCodeableConcept" : { "coding" : [{ "system" : "http://hl7.org/fhir/questionnaire-item-control", "code" : "help" }] } }], "linkId" : "PatientAccessionIdentifier-designNote", "text" : "iGene's own internal patient accession number, distinct from NHSNumber/HospitalNumber - system/assigner not yet confirmed.", "type" : "display" }] }, { "linkId" : "NHSNumber", "definition" : "http://hl7.org/fhir/StructureDefinition/Patient#Patient.identifier:nhsNumber", "text" : "NHSNumber", "type" : "string" }, { "linkId" : "PatientGivenName", "definition" : "http://hl7.org/fhir/StructureDefinition/Patient#Patient.name.given", "text" : "PatientGivenName", "type" : "string" }, { "linkId" : "PatientFamilyName", "definition" : "http://hl7.org/fhir/StructureDefinition/Patient#Patient.name.family", "text" : "PatientFamilyName", "type" : "string" }, { "linkId" : "DateOfBirth", "definition" : "http://hl7.org/fhir/StructureDefinition/Patient#Patient.birthDate", "text" : "DateOfBirth", "type" : "date" }, { "linkId" : "AdministrativeSex", "definition" : "http://hl7.org/fhir/StructureDefinition/Patient#Patient.gender", "text" : "AdministrativeSex", "type" : "string" }, { "linkId" : "PostCode", "definition" : "http://hl7.org/fhir/StructureDefinition/Patient#Patient.address.postalCode", "text" : "PostCode", "type" : "string" }, { "linkId" : "HospitalNumber", "definition" : "http://hl7.org/fhir/StructureDefinition/Patient#Patient.identifier:MedicalRecordNumber", "text" : "HospitalNumber", "type" : "string" }] }, { "linkId" : "HealthcareProfessional", "definition" : "http://hl7.org/fhir/StructureDefinition/PractitionerRole#PractitionerRole", "text" : "Healthcare Professional", "type" : "group", "item" : [{ "linkId" : "OrderingProviderIdentifier", "definition" : "http://hl7.org/fhir/StructureDefinition/PractitionerRole#PractitionerRole.practitioner.identifier.value", "text" : "OrderingProviderIdentifier", "type" : "string" }, { "linkId" : "OrderingProviderName", "definition" : "http://hl7.org/fhir/StructureDefinition/PractitionerRole#PractitionerRole.practitioner.display", "text" : "OrderingProviderName", "type" : "string" }, { "linkId" : "RequestingOrganisationCode", "definition" : "http://hl7.org/fhir/StructureDefinition/PractitionerRole#PractitionerRole.organization.identifier.value", "text" : "RequestingOrganisationCode", "type" : "string" }, { "linkId" : "RequestingOrganisationName", "definition" : "http://hl7.org/fhir/StructureDefinition/PractitionerRole#PractitionerRole.organization.display", "text" : "RequestingOrganisationName", "type" : "string" }] }, { "linkId" : "TestRequest", "definition" : "http://hl7.org/fhir/StructureDefinition/ServiceRequest#ServiceRequest", "text" : "Test Request", "type" : "group", "item" : [{ "linkId" : "HospitalSpellIdentifier", "definition" : "http://hl7.org/fhir/StructureDefinition/ServiceRequest#ServiceRequest.encounter.identifier", "text" : "HospitalSpellIdentifier", "type" : "string", "item" : [{ "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl", "valueCodeableConcept" : { "coding" : [{ "system" : "http://hl7.org/fhir/questionnaire-item-control", "code" : "help" }] } }], "linkId" : "HospitalSpellIdentifier-designNote", "text" : "Coded with the HospitalProviderSpellIdentifier extension - same pattern as Visit.partOf.identifier and HospitalSpell.identifier[HospitalSpellIdentifier] elsewhere in this IG.", "type" : "display" }] }, { "linkId" : "PlacerOrderNumber", "definition" : "http://hl7.org/fhir/StructureDefinition/ServiceRequest#ServiceRequest.identifier:OrderIdentifier", "text" : "PlacerOrderNumber", "type" : "string", "item" : [{ "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl", "valueCodeableConcept" : { "coding" : [{ "system" : "http://hl7.org/fhir/questionnaire-item-control", "code" : "help" }] } }], "linkId" : "PlacerOrderNumber-designNote", "text" : "identifier.type = PLAC (v2-0203), the same OrderIdentifier slice FillerOrderNumber below uses with type = FILL.", "type" : "display" }] }, { "linkId" : "FillerOrderNumber", "definition" : "http://hl7.org/fhir/StructureDefinition/ServiceRequest#ServiceRequest.identifier:OrderIdentifier", "text" : "FillerOrderNumber", "type" : "string", "item" : [{ "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl", "valueCodeableConcept" : { "coding" : [{ "system" : "http://hl7.org/fhir/questionnaire-item-control", "code" : "help" }] } }], "linkId" : "FillerOrderNumber-designNote", "text" : "identifier.type = FILL (v2-0203).", "type" : "display" }] }, { "linkId" : "TestAccessionIdentifier", "definition" : "http://hl7.org/fhir/StructureDefinition/ServiceRequest#ServiceRequest.identifier", "text" : "TestAccessionIdentifier", "type" : "string", "item" : [{ "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl", "valueCodeableConcept" : { "coding" : [{ "system" : "http://hl7.org/fhir/questionnaire-item-control", "code" : "help" }] } }], "linkId" : "TestAccessionIdentifier-designNote", "text" : "A further, test-level iGene identifier distinct from both the Placer and Filler Order Number slices above - exact identifier.type/system not yet confirmed.", "type" : "display" }] }, { "linkId" : "TestOrderDate", "definition" : "http://hl7.org/fhir/StructureDefinition/ServiceRequest#ServiceRequest.authoredOn", "text" : "TestOrderDate", "type" : "dateTime" }, { "linkId" : "NGTDTestCode", "definition" : "http://hl7.org/fhir/StructureDefinition/ServiceRequest#ServiceRequest.code", "text" : "NGTDTestCode", "type" : "string" }, { "linkId" : "NGTDTestName", "definition" : "http://hl7.org/fhir/StructureDefinition/ServiceRequest#ServiceRequest.code.coding.display", "text" : "NGTDTestName", "type" : "string" }, { "linkId" : "OrderStatus", "definition" : "http://hl7.org/fhir/StructureDefinition/ServiceRequest#ServiceRequest.status", "text" : "OrderStatus", "type" : "string" }, { "linkId" : "SpecimenDispatchDate", "definition" : "http://hl7.org/fhir/StructureDefinition/Observation#Observation.valueDateTime", "text" : "SpecimenDispatchDate", "type" : "dateTime", "item" : [{ "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl", "valueCodeableConcept" : { "coding" : [{ "system" : "http://hl7.org/fhir/questionnaire-item-control", "code" : "help" }] } }], "linkId" : "SpecimenDispatchDate-designNote", "text" : "Same Ask At Order Entry pattern as GenomicTestOrder's NOS/SampleSent item (Observation referenced from ServiceRequest.supportingInfo).", "type" : "display" }] }, { "linkId" : "DatasetTargetOrganisation", "definition" : "http://hl7.org/fhir/StructureDefinition/Observation#Observation.valueString", "text" : "DatasetTargetOrganisation", "type" : "string", "item" : [{ "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl", "valueCodeableConcept" : { "coding" : [{ "system" : "http://hl7.org/fhir/questionnaire-item-control", "code" : "help" }] } }], "linkId" : "DatasetTargetOrganisation-designNote", "text" : "Same Ask At Order Entry pattern as GenomicTestOrder's NOS/SampleSentTo item (Observation referenced from ServiceRequest.supportingInfo).", "type" : "display" }] }, { "linkId" : "ClinicalDetails", "definition" : "http://hl7.org/fhir/StructureDefinition/ServiceRequest#ServiceRequest.note", "text" : "ClinicalDetails", "type" : "string" }] }, { "linkId" : "Specimen", "definition" : "http://hl7.org/fhir/StructureDefinition/Specimen#Specimen", "text" : "Specimen/Biopsy", "type" : "group", "item" : [{ "linkId" : "SpecimenAccessionIdentifier", "definition" : "http://hl7.org/fhir/StructureDefinition/Specimen#Specimen.accessionIdentifier", "text" : "SpecimenAccessionIdentifier", "type" : "string" }, { "linkId" : "SpecimenTypeDescription", "definition" : "http://hl7.org/fhir/StructureDefinition/Specimen#Specimen.type.coding.display", "text" : "SpecimenTypeDescription", "type" : "string" }, { "linkId" : "SpecimenTakenDateTime", "definition" : "http://hl7.org/fhir/StructureDefinition/Specimen#Specimen.collection.collectedDateTime", "text" : "SpecimenTakenDateTime", "type" : "dateTime" }, { "linkId" : "ShipmentTrackingNumber", "definition" : "http://hl7.org/fhir/StructureDefinition/Specimen#Specimen.identifier:ShipmentTrackingNumber", "text" : "ShipmentTrackingNumber", "type" : "string" }] }] }