North West Genomic Medicine Service Alliance
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Identifiers and Codes

The conventions described below are taken from several UK national HL7 specifications, including:

Both guides are effectively merged in this guide and applied to both HL7 v2 and FHIR. The pattern used here is Canonical Data Mode, this can also be applied to other formats such as IHE XDS and DICOM.

v2 Segment FHIR Resource IHE XDS National Guide
PID Patient   NHS England (v2) and Digital Health and Care Wales (v2)
PV1 Encounter   NHS England (v2)
OBX Observation    
OBX (type = ED) DocumentReference DocumentEntry Digital Health and Care Scotland and IHE Europe
ORC ServiceRequest   Digital Health and Care Wales (v2)
OBR DiagnosticReport   Digital Health and Care Wales (v2)

This is also conformant with HL7 UK Core, which this extends.

The scope of this guide is the North West NHS region (for Genomics) and sits in the between English NHS Trusts (and their system suppliers) and NHS England.

Patient (PID) Identifiers

Only validated patient identifiers should be provided, unverified NHS Numbers are not permitted. At least one patient identifier be should be provided, the types supported are Medical Record Number (type=MR) and NHS Number (type=NH) (other types can be present). HL7 v2 PID.3 CX type and FHIR Patient.identifier have similar structures, see ConceptMap: Datatype CX to Identifier Map

Changes to v2 and FHIR:

Example

Conversion Table

Organisation Assigning Authority - ODS Code (All) Type (All) System (FHIR) OID (FHIR, v3 and IHE) Alternate name
Alder Hey Children’s NHS Foundation Trust RBS MR      
Liverpool Women’s Hospital NHS Foundation Trust REP MR      
The Christie NHS Foundation Trust RBV MR      
Manchester University NHS Foundation Trust ROA MR     Equivalent to internal v2 type = EPI

Encounter (PV1)

Organisation Assigning Authority - ODS Code (All) Type (All) System (FHIR) OID (FHIR, v3 and IHE) Alternate name
Alder Hey Children’s NHS Foundation Trust RBS VN      
Liverpool Women’s Hospital NHS Foundation Trust REP VN      
The Christie NHS Foundation Trust RBV VN      
Manchester University NHS Foundation Trust ROA VN      

Observation (OBX)

DocumentReference (OBX type ED)

ServiceRequest

Organisation Assigning Authority - ODS Code (All) Type (All) System (FHIR) OID (FHIR, v3 and IHE) Alternate name
Alder Hey Children’s NHS Foundation Trust RBS PLAC      
Liverpool Women’s Hospital NHS Foundation Trust REP PLAC      
The Christie NHS Foundation Trust RBV PLAC      
Manchester University NHS Foundation Trust ROA PLAC      
North West Genomic Medicine Service Alliance (GMSA) 699X0 FILL https://fhir.nw-gmsa.nhs.uk/Id/FillerNumber    

DiagnosticReport

Organisation Assigning Authority - ODS Code (All) Type (All) System (FHIR) OID (FHIR, v3 and IHE) Alternate name
North West Genomic Medicine Service Alliance (GMSA) 699X0   https://fhir.nw-gmsa.nhs.uk/Id/GenomicReport    

Specimen

Organisation Assigning Authority - ODS Code (All) Type (All) System (FHIR) OID (FHIR, v3 and IHE) Alternate name
Alder Hey Children’s NHS Foundation Trust RBS SID      
  RBS ASCN      
Liverpool Women’s Hospital NHS Foundation Trust REP SID      
  REP ASCN      
The Christie NHS Foundation Trust RBV SID      
  RBV ASCN      
Manchester University NHS Foundation Trust ROA SID      
  ROA ASCN      
North West Genomic Medicine Service Alliance (GMSA) 699X0 SID https://fhir.nw-gmsa.nhs.uk/Id/Specimen    
  699X0 ASCN https://fhir.nw-gmsa.nhs.uk/Id/AccessionIdentifier    

Notes

To amend an entry in these tables, amend the table directly on this GitHub page https://github.com/nw-gmsa/R4/blob/main/input/pagecontent/identifiers.md and submit a pull request.

For NHS trusts with EPRs with FHIR REST APIs (e.g. EPIC, Oracle and Cerner), the FHIR system used here SHOULD be the same. An OID can be used instead of a FHIR system, this may be defined for use with IHE XDS.