North West Genomic Medicine Service Alliance
0.0.1 - ci-build United Kingdom flag

DRAFT Implementation Guide

This is for collaboration and discussion purposes and is subject to change.

North West Genomic Medicine Service Alliance - Local Development build (v0.0.1) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

Table of Contents

.. 0 Table of Contents
... 1 Home
... 2 Laboratory Testing Workflow (LTW)
... 3 Patient Identifier Cross-referencing (PIX)
... 4 Healthcare Provider Directory (HPD)
... 5 Health Information Exchange (HIE)
... 6 Placer Order Management [LAB-1]
... 7 Filler Order Management [LAB-2]
... 8 Order Results Management [LAB-3]
... 9 Work Order Management [LAB-4]
... 10 Test Results Management [LAB-5]
... 11 Genomic Test Order
... 12 Genomic Test Report
... 13 Overview
... 14 HL7 v2 Artefacts
... 15 Architecture
... 16 Testing
... 17 Support
... 18 Authorisation (OAuth2)
... 19 Deployment
... 20 API Documentation
... 21 Artifacts Summary
.... 21.1 Automation Manager
.... 21.2 Clinical Document
.... 21.3 Intermediary
.... 21.4 Order Filler
.... 21.5 Order Placer
.... 21.6 Order Result Tracker
.... 21.7 Patient Identity Source
.... 21.8 Provider Information Source
.... 21.9 CapabilityStatement for NW GMSA Regional Integration Engine for Genomics
.... 21.10 Process Message
.... 21.11 Message Definition - Laboratory Order
.... 21.12 Message Definition - Patient Encounter
.... 21.13 Message Definition - Patient Identity
.... 21.14 Message Definition - Unsolicited Observation
.... 21.15 CBC panel - Blood by Automated count
.... 21.16 Comprehensive metabolic 2000 panel - Serum or Plasma
.... 21.17 Master HL7 genetic variant reporting panel
.... 21.18 North West Genomics Test Order
.... 21.19 North West Genomics Test Order Future
.... 21.20 Binary
.... 21.21 Composition
.... 21.22 Diagnostic Report
.... 21.23 DocumentReference
.... 21.24 Encounter
.... 21.25 MessageHeader
.... 21.26 Observation
.... 21.27 Observation Diagnostic Implication
.... 21.28 Observation Panel
.... 21.29 Observation Variant
.... 21.30 OperationOutcome
.... 21.31 Organization
.... 21.32 Patient
.... 21.33 Practitioner
.... 21.34 PractitionerRole
.... 21.35 Questionnaire
.... 21.36 QuestionnaireResponse
.... 21.37 ServiceRequest
.... 21.38 Specimen
.... 21.39 Task
.... 21.40 Accession Number
.... 21.41 Attachment
.... 21.42 CodeableReference
.... 21.43 Correlation Identifier
.... 21.44 England Practitioner Identifier
.... 21.45 Episode Number
.... 21.46 Filler Order Number
.... 21.47 Genomics Pedigree Number
.... 21.48 Medical Record Number
.... 21.49 NHS Number
.... 21.50 Organisation Code
.... 21.51 Organisation Site Code
.... 21.52 Placer Group Number
.... 21.53 Placer Order Number
.... 21.54 ExtCodeableReference
.... 21.55 Admission Method
.... 21.56 Admission Source
.... 21.57 Discharge Destination
.... 21.58 Discharge Disposition
.... 21.59 DocumentEntry Class
.... 21.60 DocumentEntry mimeType
.... 21.61 DocumentEntry Type
.... 21.62 Ethnicity
.... 21.63 Facility Type
.... 21.64 Genomic Cancer Test Directory
.... 21.65 Genomic Condition Code
.... 21.66 Genomic Rare and Inherited Disease Test Directory
.... 21.67 NW IdentifierType
.... 21.68 Order Category
.... 21.69 Patient Encounter Trigger
.... 21.70 Patient Identity Trigger
.... 21.71 Practitioner Identifiers
.... 21.72 Request Priority
.... 21.73 Service
.... 21.74 Specialty
.... 21.75 Specimen Type
.... 21.76 Yes/No
.... 21.77 Yes/No/Unknown
.... 21.78 Genomic Condition Code
.... 21.79 Genomic Test Directory
.... 21.80 MFT EPIC Question Ids
.... 21.81 NW GMSA Codes
.... 21.82 UK Professional License
.... 21.83 LOINC to SNOMED UK edition
.... 21.84 SNOMED LOINC edition to SNOMED UK edition
.... 21.85 Bundle 'Event Message' - Patient Update
.... 21.86 Genomic Order Entry Optional Questions
.... 21.87 Genomic Report BRCA1 Variant Example
.... 21.88 Genomic Report Ovarian Carcinoma Diagnostic Implication Example
.... 21.89 MCV - Mean corpuscular volume
.... 21.90 Message Header - Genomic Order Acknowledgement
.... 21.91 Message Header - Genomic Order Acknowledgement
.... 21.92 Message Header - Genomic Report
.... 21.93 Message Header - Patient
.... 21.94 Organization MANCHESTER UNIVERSITY NHS FOUNDATION TRUST
.... 21.95 Organization North West GMSA
.... 21.96 Parameters Expansion Profile
.... 21.97 Task Genomic Test Completed
.... 21.98 Task Genomic Test Requested
.... 21.99 Binary Genomic Record of Discussion Example
.... 21.100 Bundle 'Message' - Genomics Order Acknowledgement
.... 21.101 Bundle 'Message' - Genomics Order with Attachment
.... 21.102 Bundle 'Message' - Genomics Order with Coded Entries
.... 21.103 Bundle 'SearchSet' - Genomics Order
.... 21.104 Document Reference Laboratory Order
.... 21.105 High level Encounter 'episode/stay' Example
.... 21.106 Message Header - Genomic Order
.... 21.107 Message Header - Genomic Order Acknowledgement
.... 21.108 Order Entry Form Example
.... 21.109 Patient - OctaviaCHISLETT NHS Number: 9449305552
.... 21.110 PractitionerRole C3456789 Example
.... 21.111 ServiceRequest Attachment Example
.... 21.112 ServiceRequest Coded Entries Example
.... 21.113 Specimen Example
.... 21.114 Binary Genomic Report Example
.... 21.115 Bundle 'Message' - Genomics Report
.... 21.116 Diagnostic Report Example.
.... 21.117 Document Reference Laboratory Report
.... 21.118 Message Header - Genomic Report
.... 21.119 Bundle `Document` - Genetic Report
.... 21.120 Composition - Genomics Report Octavia CHISLETT
.... 21.121 EPIC-OBR-1 Example
.... 21.122 EPIC-OBX-10 Example
.... 21.123 EPIC-OBX-11 Example
.... 21.124 EPIC-OBX-2 Example
.... 21.125 EPIC-OBX-4 Example
.... 21.126 EPIC-OBX-6 Example
.... 21.127 EPIC-OBX-7 Example
.... 21.128 EPIC-OBX-8 Example
.... 21.129 Genomic Referral Category
.... 21.130 High infection risk sample
.... 21.131 Informed Consent
.... 21.132 OBX Pregnancy
.... 21.133 Supervising Clinician
.... 21.134 837d78a0-30cd-478c-83a8-f83d16fc4443