NHS North West Genomics
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: iGene Sample Sub Type - XML Representation

Active as of 2026-03-04

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<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="ISUBTYPE"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem ISUBTYPE</b></p><a name="ISUBTYPE"> </a><a name="hcISUBTYPE"> </a><p>This case-sensitive code system <code>https://fhir.nwgenomics.nhs.uk/CodeSystem/ISUBTYPE</code> provides <b>a fragment</b> that includes following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style="white-space:nowrap">AMNION/CORD<a name="ISUBTYPE-AMNION.47CORD"> </a></td><td>~Amnion / Cord</td></tr><tr><td style="white-space:nowrap">CL<a name="ISUBTYPE-CL"> </a></td><td>~Cell Line</td></tr><tr><td style="white-space:nowrap">CSF<a name="ISUBTYPE-CSF"> </a></td><td>~Cerebral Spinal Fluid</td></tr><tr><td style="white-space:nowrap">LN<a name="ISUBTYPE-LN"> </a></td><td>~Lymph Node</td></tr><tr><td style="white-space:nowrap">MALIG EFF<a name="ISUBTYPE-MALIGEFF"> </a></td><td>~Malignant Effusion</td></tr><tr><td style="white-space:nowrap">PAB<a name="ISUBTYPE-PAB"> </a></td><td>~Paraffin Block</td></tr><tr><td style="white-space:nowrap">Stored Fibroblast<a name="ISUBTYPE-StoredFibroblast"> </a></td><td>~Stored Fibroblast Sample</td></tr><tr><td style="white-space:nowrap">AF<a name="ISUBTYPE-AF"> </a></td><td>Amniotic Fluid</td></tr><tr><td style="white-space:nowrap">ASF<a name="ISUBTYPE-ASF"> </a></td><td>Ascitic Fluid</td></tr><tr><td style="white-space:nowrap">BL<a name="ISUBTYPE-BL"> </a></td><td>Blood</td></tr><tr><td style="white-space:nowrap">BS<a name="ISUBTYPE-BS"> </a></td><td>Buccal Swab</td></tr><tr><td style="white-space:nowrap">CP<a name="ISUBTYPE-CP"> </a></td><td>Cell Pellet</td></tr><tr><td style="white-space:nowrap">CV<a name="ISUBTYPE-CV"> </a></td><td>Chorionic Villus Biopsy</td></tr><tr><td style="white-space:nowrap">CORD/AMNION<a name="ISUBTYPE-CORD.47AMNION"> </a></td><td>Cord / Amnion</td></tr><tr><td style="white-space:nowrap">CB<a name="ISUBTYPE-CB"> </a></td><td>Cord Blood</td></tr><tr><td style="white-space:nowrap">CORD INS<a name="ISUBTYPE-CORDINS"> </a></td><td>Cord Insertion Site</td></tr><tr><td style="white-space:nowrap">CC<a name="ISUBTYPE-CC"> </a></td><td>Cultured Cells</td></tr><tr><td style="white-space:nowrap">CT<a name="ISUBTYPE-CT"> </a></td><td>Cultured Tissue</td></tr><tr><td style="white-space:nowrap">Fetal Blood<a name="ISUBTYPE-FetalBlood"> </a></td><td>Fetal Blood</td></tr><tr><td style="white-space:nowrap">FETAL<a name="ISUBTYPE-FETAL"> </a></td><td>Fetal Tissue</td></tr><tr><td style="white-space:nowrap">FCS<a name="ISUBTYPE-FCS"> </a></td><td>Fixed Cell Suspension</td></tr><tr><td style="white-space:nowrap">GERMLINE<a name="ISUBTYPE-GERMLINE"> </a></td><td>Germline</td></tr><tr><td style="white-space:nowrap">WGS_LIQ_TUM_SAMP<a name="ISUBTYPE-WGS_LIQ_TUM_SAMP"> </a></td><td>Liquid tumour sample</td></tr><tr><td style="white-space:nowrap">LIVER<a name="ISUBTYPE-LIVER"> </a></td><td>Liver</td></tr><tr><td style="white-space:nowrap">LUNG<a name="ISUBTYPE-LUNG"> </a></td><td>Lung</td></tr><tr><td style="white-space:nowrap">MUSCLE<a name="ISUBTYPE-MUSCLE"> </a></td><td>Muscle</td></tr><tr><td style="white-space:nowrap">NORM<a name="ISUBTYPE-NORM"> </a></td><td>Normal</td></tr><tr><td style="white-space:nowrap">WGS_NOR_GERM_SAMP<a name="ISUBTYPE-WGS_NOR_GERM_SAMP"> </a></td><td>Normal or Germline sample</td></tr><tr><td style="white-space:nowrap">NORMT<a name="ISUBTYPE-NORMT"> </a></td><td>Normal Tissue</td></tr><tr><td style="white-space:nowrap">MEMB<a name="ISUBTYPE-MEMB"> </a></td><td>Placental Membrane</td></tr><tr><td style="white-space:nowrap">PLAC<a name="ISUBTYPE-PLAC"> </a></td><td>Placental Villus</td></tr><tr><td style="white-space:nowrap">POC<a name="ISUBTYPE-POC"> </a></td><td>Products Of Conception</td></tr><tr><td style="white-space:nowrap">SALIVA<a name="ISUBTYPE-SALIVA"> </a></td><td>Saliva</td></tr><tr><td style="white-space:nowrap">SKIN<a name="ISUBTYPE-SKIN"> </a></td><td>Skin Biopsy</td></tr><tr><td style="white-space:nowrap">WGS_SOL_TUM_SAMP<a name="ISUBTYPE-WGS_SOL_TUM_SAMP"> </a></td><td>Solid tumour sample</td></tr><tr><td style="white-space:nowrap">SPLEEN<a name="ISUBTYPE-SPLEEN"> </a></td><td>Spleen</td></tr><tr><td style="white-space:nowrap">TISS<a name="ISUBTYPE-TISS"> </a></td><td>Tissue</td></tr><tr><td style="white-space:nowrap">TUM<a name="ISUBTYPE-TUM"> </a></td><td>Tumour</td></tr><tr><td style="white-space:nowrap">CORD<a name="ISUBTYPE-CORD"> </a></td><td>Umbilical Cord</td></tr><tr><td style="white-space:nowrap">URINE<a name="ISUBTYPE-URINE"> </a></td><td>Urine</td></tr></table></div>
  </text>
  <url value="https://fhir.nwgenomics.nhs.uk/CodeSystem/ISUBTYPE"/>
  <version value="0.2.1"/>
  <name value="ISUBTYPE"/>
  <title value="iGene Sample Sub Type"/>
  <status value="active"/>
  <experimental value="false"/>
  <date value="2026-03-04"/>
  <publisher value="NHS North West Genomics"/>
  <contact>
    <telecom>
      <system value="url"/>
      <value value="https://www.nwgenomics.nhs.uk/contact-us"/>
    </telecom>
  </contact>
  <description value="iGene Sample Sub Type"/>
  <jurisdiction>
    <coding>
      <system value="urn:iso:std:iso:3166"/>
      <code value="GB"/>
      <display value="United Kingdom of Great Britain and Northern Ireland"/>
    </coding>
  </jurisdiction>
  <caseSensitive value="true"/>
  <content value="fragment"/>
  <concept>
    <code value="AMNION/CORD"/>
    <display value="~Amnion / Cord"/>
  </concept>
  <concept>
    <code value="CL"/>
    <display value="~Cell Line"/>
  </concept>
  <concept>
    <code value="CSF"/>
    <display value="~Cerebral Spinal Fluid"/>
  </concept>
  <concept>
    <code value="LN"/>
    <display value="~Lymph Node"/>
  </concept>
  <concept>
    <code value="MALIG EFF"/>
    <display value="~Malignant Effusion"/>
  </concept>
  <concept>
    <code value="PAB"/>
    <display value="~Paraffin Block"/>
  </concept>
  <concept>
    <code value="Stored Fibroblast"/>
    <display value="~Stored Fibroblast Sample"/>
  </concept>
  <concept>
    <code value="AF"/>
    <display value="Amniotic Fluid"/>
  </concept>
  <concept>
    <code value="ASF"/>
    <display value="Ascitic Fluid"/>
  </concept>
  <concept>
    <code value="BL"/>
    <display value="Blood"/>
  </concept>
  <concept>
    <code value="BS"/>
    <display value="Buccal Swab"/>
  </concept>
  <concept>
    <code value="CP"/>
    <display value="Cell Pellet"/>
  </concept>
  <concept>
    <code value="CV"/>
    <display value="Chorionic Villus Biopsy"/>
  </concept>
  <concept>
    <code value="CORD/AMNION"/>
    <display value="Cord / Amnion"/>
  </concept>
  <concept>
    <code value="CB"/>
    <display value="Cord Blood"/>
  </concept>
  <concept>
    <code value="CORD INS"/>
    <display value="Cord Insertion Site"/>
  </concept>
  <concept>
    <code value="CC"/>
    <display value="Cultured Cells"/>
  </concept>
  <concept>
    <code value="CT"/>
    <display value="Cultured Tissue"/>
  </concept>
  <concept>
    <code value="Fetal Blood"/>
    <display value="Fetal Blood"/>
  </concept>
  <concept>
    <code value="FETAL"/>
    <display value="Fetal Tissue"/>
  </concept>
  <concept>
    <code value="FCS"/>
    <display value="Fixed Cell Suspension"/>
  </concept>
  <concept>
    <code value="GERMLINE"/>
    <display value="Germline"/>
  </concept>
  <concept>
    <code value="WGS_LIQ_TUM_SAMP"/>
    <display value="Liquid tumour sample"/>
  </concept>
  <concept>
    <code value="LIVER"/>
    <display value="Liver"/>
  </concept>
  <concept>
    <code value="LUNG"/>
    <display value="Lung"/>
  </concept>
  <concept>
    <code value="MUSCLE"/>
    <display value="Muscle"/>
  </concept>
  <concept>
    <code value="NORM"/>
    <display value="Normal"/>
  </concept>
  <concept>
    <code value="WGS_NOR_GERM_SAMP"/>
    <display value="Normal or Germline sample"/>
  </concept>
  <concept>
    <code value="NORMT"/>
    <display value="Normal Tissue"/>
  </concept>
  <concept>
    <code value="MEMB"/>
    <display value="Placental Membrane"/>
  </concept>
  <concept>
    <code value="PLAC"/>
    <display value="Placental Villus"/>
  </concept>
  <concept>
    <code value="POC"/>
    <display value="Products Of Conception"/>
  </concept>
  <concept>
    <code value="SALIVA"/>
    <display value="Saliva"/>
  </concept>
  <concept>
    <code value="SKIN"/>
    <display value="Skin Biopsy"/>
  </concept>
  <concept>
    <code value="WGS_SOL_TUM_SAMP"/>
    <display value="Solid tumour sample"/>
  </concept>
  <concept>
    <code value="SPLEEN"/>
    <display value="Spleen"/>
  </concept>
  <concept>
    <code value="TISS"/>
    <display value="Tissue"/>
  </concept>
  <concept>
    <code value="TUM"/>
    <display value="Tumour"/>
  </concept>
  <concept>
    <code value="CORD"/>
    <display value="Umbilical Cord"/>
  </concept>
  <concept>
    <code value="URINE"/>
    <display value="Urine"/>
  </concept>
</CodeSystem>