NHS North West Genomics
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NHS North West Genomics - Local Development build (v2.0.12) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: Specimen Type - TTL Representation

Draft as of 2026-06-21

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:ValueSet ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "specimen-type"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet specimen-type</b></p><a name=\"specimen-type\"> </a><a name=\"hcspecimen-type\"> </a><p>This value set includes codes based on the following rules:</p><ul><li>Include these codes as defined in <a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a><span title=\"Version is not explicitly stated. No matching Code System found\"> version Not Stated (use latest from terminology server)</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b><a href=\"ConceptMap-SampleTypeSCTtoIGENE.html\">Sample Type (SNOMED) to iGene Specimen Type</a></b></td></tr><tr><td><a href=\"http://snomed.info/id/119297000\">119297000</a></td><td style=\"color: #cccccc\">Blood specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58BL\">SAMPLE: BL</a></td></tr><tr><td><a href=\"http://snomed.info/id/119373006\">119373006</a></td><td style=\"color: #cccccc\">Amniotic fluid specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58AF\">SAMPLE: AF</a></td></tr><tr><td><a href=\"http://snomed.info/id/309201001\">309201001</a></td><td style=\"color: #cccccc\">Ascitic fluid sample</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58Asciticfluid\">SAMPLE: Ascitic fluid</a></td></tr><tr><td><a href=\"http://snomed.info/id/258580003\">258580003</a></td><td style=\"color: #cccccc\">Whole blood sample</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58BL\">SAMPLE: BL</a></td></tr><tr><td><a href=\"http://snomed.info/id/122552005\">122552005</a></td><td style=\"color: #cccccc\">Arterial blood specimen</td><td/></tr><tr><td><a href=\"http://snomed.info/id/122556008\">122556008</a></td><td style=\"color: #cccccc\">Cord blood specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58BL\">SAMPLE: BL</a></td></tr><tr><td><a href=\"http://snomed.info/id/737357006\">737357006</a></td><td style=\"color: #cccccc\">Foetal blood specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58BL\">SAMPLE: BL</a></td></tr><tr><td><a href=\"http://snomed.info/id/122555007\">122555007</a></td><td style=\"color: #cccccc\">Venous blood specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58BL\">SAMPLE: BL</a></td></tr><tr><td><a href=\"http://snomed.info/id/440500007\">440500007</a></td><td style=\"color: #cccccc\">Blood spot specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58BSP\">SAMPLE: BSP</a></td></tr><tr><td><a href=\"http://snomed.info/id/119359002\">119359002</a></td><td style=\"color: #cccccc\">Bone marrow specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58BM\">SAMPLE: BM</a></td></tr><tr><td><a href=\"http://snomed.info/id/733104004\">733104004</a></td><td style=\"color: #cccccc\">Buccal swab</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58BS\">SAMPLE: BS</a></td></tr><tr><td><a href=\"http://snomed.info/id/258450006\">258450006</a></td><td style=\"color: #cccccc\">Cerebrospinal fluid sample</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58CSF\">SAMPLE: CSF</a></td></tr><tr><td><a href=\"http://snomed.info/id/258565009\">258565009</a></td><td style=\"color: #cccccc\">Chorionic villi sample</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58CVB\">SAMPLE: CVB</a></td></tr><tr><td><a href=\"http://snomed.info/id/702451000\">702451000</a></td><td style=\"color: #cccccc\">Cultured cells</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58CultCells\">SAMPLE: Cult Cells</a></td></tr><tr><td><a href=\"http://snomed.info/id/309147000\">309147000</a></td><td style=\"color: #cccccc\">Thyroid cyst fluid sample</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58Cysticfluid\">SAMPLE: Cystic fluid</a></td></tr><tr><td><a href=\"http://snomed.info/id/258566005\">258566005</a></td><td style=\"color: #cccccc\">Deoxyribonucleic acid sample</td><td/></tr><tr><td><a href=\"http://snomed.info/id/441652008\">441652008</a></td><td style=\"color: #cccccc\">Formalin-fixed paraffin-embedded tissue specimen</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58FFPE-SL\">SAMPLE: FFPE-SL</a><br/><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58FFPE-SH\">SAMPLE: FFPE-SH</a><br/><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58FFPE-PCS\">SAMPLE: FFPE-PCS</a></td></tr><tr><td><a href=\"http://snomed.info/id/3040001000004100\">3040001000004100</a></td><td>Paraffin embedded tissue block specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58FFPE-WB\">SAMPLE: FFPE-WB</a></td></tr><tr><td><a href=\"http://snomed.info/id/1003517007\">1003517007</a></td><td>Freeze dried specimen</td><td/></tr><tr><td><a href=\"http://snomed.info/id/122571007\">122571007</a></td><td>Pericardial fluid specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58PERICARDIALFLUID\">SAMPLE: PERICARDIAL FLUID</a></td></tr><tr><td><a href=\"http://snomed.info/id/418564007\">418564007</a></td><td>Pleural fluid specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58PLF\">SAMPLE: PLF</a></td></tr><tr><td><a href=\"http://snomed.info/id/119342007\">119342007</a></td><td>Saliva specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58SALIVA\">SAMPLE: SALIVA</a></td></tr><tr><td><a href=\"http://snomed.info/id/441479001\">441479001</a></td><td>Fresh tissue specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58TC\">SAMPLE: TC</a></td></tr><tr><td><a href=\"http://snomed.info/id/16214131000119100\">16214131000119100</a></td><td>Frozen tissue section specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58TC\">SAMPLE: TC</a></td></tr><tr><td><a href=\"http://snomed.info/id/122575003\">122575003</a></td><td>Urine specimen</td><td><span title=\"EQUIVALENT\">~</span><a href=\"CodeSystem-IGENE.html#IGENE-SAMPLE.58Urine\">SAMPLE: Urine</a></td></tr><tr><td><a href=\"http://snomed.info/id/441673008\">441673008</a></td><td>Ribonucleic acid specimen (specimen)</td><td/></tr></table></li><li>Include all codes defined in <a href=\"CodeSystem-IGENE.html\"><code>https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE</code></a><span title=\"Version is not explicitly stated, which means it is fixed to the version provided in this specification\"> version ?2.0.12</span></li></ul></div>"^^rdf:XMLLiteral ]
  ] ; # 
  fhir:url [
fhir:v "https://fhir.nwgenomics.nhs.uk/ValueSet/specimen-type"^^xsd:anyURI ;
fhir:l <https://fhir.nwgenomics.nhs.uk/ValueSet/specimen-type>
  ] ; # 
  fhir:version [ fhir:v "2.0.12"] ; # 
  fhir:name [ fhir:v "SpecimenType"] ; # 
  fhir:title [ fhir:v "Specimen Type"] ; # 
  fhir:status [ fhir:v "draft"] ; # 
  fhir:experimental [ fhir:v false] ; # 
  fhir:date [ fhir:v "2026-06-21T07:38:47+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "NHS North West Genomics"] ; # 
  fhir:contact ( [
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "https://www.nwgenomics.nhs.uk/contact-us" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "A subset of [HL7 Europe Laboratory Report ValueSet: Specimen Types](https://build.fhir.org/ig/hl7-eu/laboratory/ValueSet-lab-specimenType-eu-lab.html)\nLocal codes are provided for backward compatability, SNOMED codes are preferred."] ; # 
  fhir:jurisdiction ( [
    ( fhir:coding [
fhir:system [
fhir:v "urn:iso:std:iso:3166"^^xsd:anyURI ;
fhir:l <urn:iso:std:iso:3166>       ] ;
fhir:code [ fhir:v "GB" ] ;
fhir:display [ fhir:v "United Kingdom of Great Britain and Northern Ireland" ]     ] )
  ] ) ; # 
  fhir:compose [
    ( fhir:include [
fhir:system [
fhir:v "http://snomed.info/sct"^^xsd:anyURI ;
fhir:l <http://snomed.info/sct>       ] ;
      ( fhir:concept [
fhir:code [ fhir:v "119297000" ]       ] [
fhir:code [ fhir:v "119373006" ]       ] [
fhir:code [ fhir:v "309201001" ]       ] [
fhir:code [ fhir:v "258580003" ]       ] [
fhir:code [ fhir:v "122552005" ]       ] [
fhir:code [ fhir:v "122556008" ]       ] [
fhir:code [ fhir:v "737357006" ]       ] [
fhir:code [ fhir:v "122555007" ]       ] [
fhir:code [ fhir:v "440500007" ]       ] [
fhir:code [ fhir:v "119359002" ]       ] [
fhir:code [ fhir:v "733104004" ]       ] [
fhir:code [ fhir:v "258450006" ]       ] [
fhir:code [ fhir:v "258565009" ]       ] [
fhir:code [ fhir:v "702451000" ]       ] [
fhir:code [ fhir:v "309147000" ]       ] [
fhir:code [ fhir:v "258566005" ]       ] [
fhir:code [ fhir:v "441652008" ]       ] [
fhir:code [ fhir:v "3040001000004100" ] ;
fhir:display [ fhir:v "Paraffin embedded tissue block specimen" ]       ] [
fhir:code [ fhir:v "1003517007" ] ;
fhir:display [ fhir:v "Freeze dried specimen" ]       ] [
fhir:code [ fhir:v "122571007" ] ;
fhir:display [ fhir:v "Pericardial fluid specimen" ]       ] [
fhir:code [ fhir:v "418564007" ] ;
fhir:display [ fhir:v "Pleural fluid specimen" ]       ] [
fhir:code [ fhir:v "119342007" ] ;
fhir:display [ fhir:v "Saliva specimen" ]       ] [
fhir:code [ fhir:v "441479001" ] ;
fhir:display [ fhir:v "Fresh tissue specimen" ]       ] [
fhir:code [ fhir:v "16214131000119100" ] ;
fhir:display [ fhir:v "Frozen tissue section specimen" ]       ] [
fhir:code [ fhir:v "122575003" ] ;
fhir:display [ fhir:v "Urine specimen" ]       ] [
fhir:code [ fhir:v "441673008" ] ;
fhir:display [ fhir:v "Ribonucleic acid specimen (specimen)" ]       ] )     ] [
fhir:system [
fhir:v "https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE"^^xsd:anyURI ;
fhir:l <https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE>       ]     ] )
  ] . #