NHS North West Genomics
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NHS North West Genomics - Local Development build (v2.2.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

CodeSystem: NW GMSA Codes

Official URL: https://fhir.nwgenomics.nhs.uk/CodeSystem/NWGMSA Version: 2.2.0
Active as of 2025-05-06 Computable Name: NWGMSA

Bucket for local codes

This Code system is referenced in the definition of the following value sets:

This case-sensitive code system https://fhir.nwgenomics.nhs.uk/CodeSystem/NWGMSA defines the following codes:

CodeDisplay
SouthEastAsian South East Asian
NorthernEuropean Northern European
JewishNOS Jewish NOS
IrishTraveller Gypsy/Traveller/ Irish Traveller
Traveller Gypsy/Traveller
Roma Roma
AshkenaziJew Ashkenazi Jew, follower of religion (person)
RareAndInheritedDiseasesGeneticTesting Rare and inherited diseases Genetic Testing (procedure)
PreNatalGeneticTesting Pre Natal Genetic Testing (procedure)
HaemoglobinopathyGeneticTesting Haemoglobinopathy Genetic Testing (procedure)
CancerGeneticTesting Cancer Genetic Testing (procedure)
GeneticistEmail Clinical Geneticist email
GeneticistDepartmentEmail Clinical Geneticist department email
RODToFollow ROD attached or to follow
InfectionRiskDetails High infection Risk Details
VariantReinterpretationReason Reason For Variant Re-Interpretation Request
SampleSent Date and time sample sent
TransportUsed Transport used
SampleSentTo Sample sent to
SampleSentToName Name of person who sent sample
TESTOUTCOME NHS England Genomics Test Outcome
FamilyStructure Family Structure
ParticipantType Participant Type
RelatedIndividualRole Related Individual Role
RoleConsultand Consultand
RoleProband Proband
230056 What Type of Referral Do You Require?
230016 Test Type
231284 Please Select R240 Test(s):
231285 Please Select R242 Test(s):
230027 Email Addresses of Non-MFT Clinicians for Result Reports
230037 Please Acknowledge That a DNA Sample Will be Stored in the Laboratory on Completion of Testing
230039 Is the Person Ordering the Test the Referring Clinician
GENEAP GENETICS TEST PERFORMABLE
unknown Unknown
ZCID Container Identifier
Patient Patient
Donor Donor
StemCell Stem cell
Renal Renal
Thoracic Thoracic
Kidney Kidney
Pancreas Pancreas
Islets Islets
SimultaneousPancreasKidney Simultaneous Pancreas/Kidney
SimultaneousIsletKidney Simultaneous Islet/Kidney
HLATypingAntibodyScreening HLA Typing + Antibody Screening
HLAAntibodyScreening HLA Antibody Screening
HLATypeRecipient HLA Type Recipient
DSA DSA
HLAAutoXM HLA Auto XM
HistoBlood Blood
HistoBuccal Buccal
HistoOther Other
ChimerismBloodPB Blood (PB)
ChimerismBoneMarrowBM Bone Marrow (BM)
ChimerismPeripheralBlood Chimerism Peripheral Blood
ChimerismCD3 Chimerism CD3
ChimerismCD15 Chimerism CD15
ChimerismCD19 Chimerism CD19
ChimerismLineageOther Chimerism Lineage Other
HRDPathwayNewlyDiagnosed HRD/tumour BRCA pathway - newly diagnosed
HRDPathwayRelapsed HRD/tumour BRCA pathway - relapsed
NewlyDiagnosedAdvancedDiseaseConfirmation Confirmation of newly diagnosed, advanced high-grade epithelial ovarian, fallopian tube or primary peritoneal cancer
RelapsedDiseaseConfirmation Confirmation of relapsed high-grade disease, second line of treatment or beyond
NeoplasticCellContent Neoplastic cell content (%)
PathologistName Pathologist name
PathologyHospital Pathology hospital
MyriadInternationalTransferConsent Consent for tissue, pathology report and personal details to be sent to Myriad Genetics Inc. (United States) for analysis
HaemOncPanelRequested Haemato-Oncology test panel requested
DifferentialDiagnosis Differential diagnosis/clinical question
ClinicalUtilityPatientManagement Patient management (determining therapeutic decisions and/or clinical investigations and/or surveillance programme)
ClinicalUtilityReproductiveDecision Patient, parents, or adult relative reproductive decision making
ClinicalUtilityPredictiveTesting Unaffected relatives are seeking predictive testing
TargetedFamilialVariant Known familial variant and affected relative details (targeted familial testing)
RelativeOrPartnerStatus Status of relative/partner (affected or carrier)
RelativeOrPartnerVariant Details of the relative/partner's variant, if known
GeneticStatusAffected Affected
GeneticStatusCarrier Carrier
HbA2Percent Hb A2 (%)
HbFPercent Hb F (%)
OtherHbPercent Other Hb (%)
CFReferralScenario CF carrier testing referral scenario
CFReferralFamilyHistory Family history of CF
CFReferralPartner Partner of a patient affected with, or a carrier of, CF
WGSPathwayRareDiseaseProband WGS pathway - Rare Disease, Proband
WGSPathwayRareDiseaseFamilyMember WGS pathway - Rare Disease, Family Member
WGSPathwayCancerTumour WGS pathway - Cancer, Tumour Sample
WGSPathwayCancerGermline WGS pathway - Cancer, Germline Sample
VariantReviewReasonNewInformation New information (e.g. segregation data, change in phenotype, publication)
VariantReviewReasonTimeElapsed Sufficient time having passed since the initial review (>2 years)
VariantReviewReasonUrgent Urgent clinical scenario, e.g. prenatal diagnosis
VariantReviewReasonFormalClassification Variant requiring formal classification, using ACGS guidelines, where none exists
ReportReference Prior report reference
DeafnessSyndromePendred Pendred syndrome
DeafnessSyndromeUsher Usher syndrome
DeafnessSyndromeJervellLangeNielsen Jervell-Lange Nielsen syndrome
DeafnessSyndromeWaardenburg Waardenburg syndrome
DeafnessSyndromeBranchioOtoRenal Branchio-oto-renal syndrome
DeafnessSyndromeWolfram Wolfram syndrome
DeafnessRiskFactorPrematurity Prematurity
DeafnessRiskFactorHyperbilirubinemia Hyperbilirubinemia
DeafnessRiskFactorProlongedNNUStay Prolonged neonatal care unit stay
DeafnessRiskFactorOtotoxicMedication Ototoxic medication
AudiogramSeverityRight Audiogram severity - right ear
AudiogramSeverityLeft Audiogram severity - left ear
AudiogramProgression Audiogram progression
NHSPatient NHS patient
PrivatePatient Private patient
ReportMethodEmail Email
ReportMethodFax Fax
ReasonNHSNumberNotAvailable Reason NHS Number not available
FamilyTestType Family test type (Singleton/Trio/Other)
FamilyTestSingleton Singleton
FamilyTestTrio Trio
FamilyTestOther Other
FamilyMemberStatus Family member status (form field purpose unconfirmed)
UrgencyReason Reason for urgency (Clinical Priority)
AdditionalPanels Additional gene panel(s) (Genomics England PanelApp, GMS Rare Disease Virtual)
ProbandAgeAtOnset Proband's age at onset of clinical features
SpecificRareDiseaseSuspected Specific rare disease suspected or confirmed
HPOTerm HPO (Human Phenotype Ontology) term
MainContact Main contact (if different from responsible clinician/consultant)
PresentationStatus Presentation status (First diagnosis/Recurrence/Relapse/Unknown)
PresentationFirstDiagnosis First diagnosis
PresentationRecurrenceRelapse Recurrence/Relapse
TumourPresentationType Tumour presentation type (Primary/Metastatic/Unknown/Lymphoma)
TumourPresentationPrimary Primary
TumourPresentationMetastatic Metastatic
TumourPresentationLymphoma Lymphoma
HistopathologyLabID Histopathology Lab ID
SIHMDSLabID SIHMDS Lab ID
HaematoOncologyLiquidTumourType Haemato-oncology liquid tumour type (AML/ALL/Other)
NucleatedCellCount Nucleated cell count (bone marrow/peripheral blood sample)
FamilyMemberPotentialDonor Family Member / Potential Donor
CMVPositive Positive
CMVNegative Negative
CMVDontKnow Don't know
HLAClassITyping HLA Class I type
HLAClassIAndIITyping HLA Class I and Class II type
ChimerismTotalWholeBlood Total / Whole Blood
ChimerismLineageSpecificHSCT Lineage specific
CategoryPatientRenal Patient - Renal
CategoryPatientNonRenal Patient - Non-Renal
CategoryDonor Donor
RenalPreDialysis Pre-dialysis
RenalCAPD CAPD
RenalHaemodialysis Haemodialysis
RenalPostTransplant Post transplant
NonRenalCardiothoracic Cardiothoracic
NonRenalLiverSmallBowel Liver/small bowel
NonRenalCornea Cornea
NonRenalOther Other
DonorPreTransplant Pre transplant
DonorPostTransplant Post transplant
DonorLiveDonor Live donor
DonorAltruisticDonor Altruistic donor
OrganHLAType HLA type
OrganHLASpecificAntibodies HLA specific antibodies
OrganLiveDonorCrossmatch Live donor crossmatch
OrganAutoCrossmatch Auto crossmatch
WGSParticipantTypeProband Proband
WGSParticipantTypeFamilyMember Family Member

Description of the above table(s).