  0 Table of Contents |
  1 Home |
| 2 How To Engineer (scale and deliver) Interoperability |
| 3 Laboratory Testing Workflow (LTW) |
| 4 Inter Laboratory Workflow (ILW) |
| 5 Specimen Transportation and Management |
| 6 Genetic Referrals |
| 7 Referral Request [PCC-55] (Future Use) |
| 8 Referral Decline [PCC-56] (Future Use) |
| 9 Referral Outcome [PCC-57] (Future Use) |
| 10 Health Data API (HIE/EURDICE) |
| 11 API Security |
| 12 Resource Access [IPA/QEDm] |
| 13 Message Exchange [LTW/MQ] |
| 14 Document Exchange [MHD] |
| 15 Patient Identity Matching (PDQm) |
| 16 Authorisation [IUA] |
| 17 HL7 v2 Standards |
| 18 Testing |
| 19 Support |
| 20 Overview - Data Contracts |
| 21 Developer Guides |
| 22 Architecture |
| 23 Architecture - Enterprise Integration Patterns (EIP) |
| 24 Diagnostic Model Overview |
| 25 Report Types |
 26 Artifacts Summary |
 26.1 Automation Manager |
| 26.2 Clinical Document |
| 26.3 Document Access Provider |
| 26.4 Document Consumer |
| 26.5 Document Publisher |
| 26.6 Genomic Analysis and Interpretation |
| 26.7 Intermediary |
| 26.8 Order Filler |
| 26.9 Order Placer |
| 26.10 Order Result Tracker |
| 26.11 Patient Identity Source |
| 26.12 Provider Information Source |
| 26.13 Requestor (ILW) |
| 26.14 Resource Access Provider |
| 26.15 Subcontractor (ILW) |
| 26.16 CapabilityStatement for NW Genomics Genomic Data Platform (EURIDICE Health Data API) |
| 26.17 CapabilityStatement for NW GMSA Regional Orchestration Engine for Genomics |
| 26.18 Process Message |
| 26.19 Message Definition - Acknowledgement |
| 26.20 Message Definition - Document and Document Notification |
| 26.21 Message Definition - Laboratory Order |
| 26.22 Message Definition - Referral Order (O19) |
| 26.23 Message Definition - Referral Order Status (O51) |
| 26.24 Message Definition - Unsolicited Observation |
| 26.25 assigner |
| 26.26 Genetic Clinical Referral |
| 26.27 Genomic Test Order |
| 26.28 Genomic Test Report |
| 26.29 BCR-ABL Monitoring Result Panel |
| 26.30 Cancer Test Additional Ask At Order Entry Questions |
| 26.31 Chimerism Test Additional Ask At Order Entry Questions |
| 26.32 Chimerism Testing Result Panel |
| 26.33 CYP2C19 Mavacamten (R454) Ask At Order Entry Questions |
| 26.34 Cystic Fibrosis Carrier Testing Ask At Order Entry Questions |
| 26.35 Deafness (R67) Ask At Order Entry Questions |
| 26.36 dWGS Ask At Order Entry Questions |
| 26.37 Genetic Clinical Referral |
| 26.38 Genetic Clinical Referral - Consultand (RelatedPerson) |
| 26.39 Genomic Variant Review Ask At Order Entry Questions |
| 26.40 GMS WGS Cancer Ask At Order Entry Questions |
| 26.41 GMS WGS Rare Disease |
| 26.42 H&I Haematopoietic Stem Cell Transplantation (Recipients & Donors) Ask At Order Entry |
| 26.43 H&I Organ Transplant (Patients and Donors) Ask At Order Entry |
| 26.44 Haemato-Oncology Ask At Order Entry Questions |
| 26.45 Haemoglobinopathy Genetic Testing Ask At Order Entry Questions |
| 26.46 HLA Tests - Transplant Ask At Order Entry |
| 26.47 HRD and Tumour BRCA Ask At Order Entry Questions |
| 26.48 iGene Laboratory Order Export (CSV) |
| 26.49 iGene Work Order Export (CSV) |
| 26.50 Master HL7 genetic variant reporting panel |
| 26.51 North West Genomics dWGS Sub-Order Manifest |
| 26.52 North West Genomics Test Order |
| 26.53 North West Genomics Test Report |
| 26.54 NW Genomic General Ask At Order Questions |
| 26.55 Prenatal Haemoglobinopathy Ask At Order Entry Questions |
| 26.56 Rare Disease Genomic Testing Ask At Order Entry Questions |
| 26.57 Reportable Variant Result Panel |
| 26.58 WGS Local Test Order Ask At Order Entry Questions |
| 26.59 WGS Test Additional Ask At Order Entry Questions |
| 26.60 AuditEvent |
| 26.61 Binary |
| 26.62 Bundle - FHIR Document |
| 26.63 Bundle - FHIR Messaging |
| 26.64 Composition Genomic Report |
| 26.65 Condition |
| 26.66 Diagnostic Implication (Observation) |
| 26.67 Diagnostic Report |
| 26.68 Document Message (MessageHeader) |
| 26.69 DocumentReference |
| 26.70 Encounter |
| 26.71 Event Notification (MessageHeader) |
| 26.72 Family Genetic Group |
| 26.73 FamilyMemberHistory |
| 26.74 Genomic Observation |
| 26.75 Genomic Study Panel |
| 26.76 Genotype (Observation) |
| 26.77 Haplotype (Observation) |
| 26.78 Hospital Spell |
| 26.79 Laboratory Analyte Result (Observation) |
| 26.80 Molecular Biomarker |
| 26.81 Molecular Consequence (Observation) |
| 26.82 Observation |
| 26.83 Observation Order |
| 26.84 Observation Panel |
| 26.85 OperationOutcome |
| 26.86 Organization |
| 26.87 Patient |
| 26.88 Practitioner |
| 26.89 PractitionerRole |
| 26.90 Procedure |
| 26.91 Questionnaire |
| 26.92 QuestionnaireResponse |
| 26.93 RelatedPerson |
| 26.94 ServiceRequest |
| 26.95 Specimen |
| 26.96 Task |
| 26.97 Therapeutic Implication (Observation) |
| 26.98 Variant (Observation) |
| 26.99 Visit |
| 26.100 WorkOrder |
| 26.101 Attachment |
| 26.102 CodeableReference |
| 26.103 Correlation Identifier |
| 26.104 Genomics Pedigree Number |
| 26.105 GS1 Global Service Relation Number (GSRN) |
| 26.106 GS1 Serial Shipping Container Code (SSCC) |
| 26.107 GS1 Service Relation Instance Number (SRIN) |
| 26.108 Hospital Provider Spell Identifier |
| 26.109 Medical Record Number |
| 26.110 NGIS Referral Id |
| 26.111 NHS Identifier |
| 26.112 Order Group Number |
| 26.113 Order Identifier |
| 26.114 Organisation Code |
| 26.115 Organisation Site Identifier |
| 26.116 Patient Identifier |
| 26.117 Practitioner Identifier |
| 26.118 Report Identifier |
| 26.119 Shipment Tracking Number |
| 26.120 Specimen Accession Number |
| 26.121 Visit Number |
| 26.122 ExtCodeableReference |
| 26.123 Family Member History Reference |
| 26.124 Family Member Relationship |
| 26.125 Admission Method |
| 26.126 Admission Source |
| 26.127 Discharge Destination |
| 26.128 Discharge Disposition |
| 26.129 DocumentEntry Class |
| 26.130 DocumentEntry mimeType |
| 26.131 DocumentEntry Type |
| 26.132 Ethnicity |
| 26.133 Facility Type |
| 26.134 Family Structure |
| 26.135 Genomic Cancer Test Directory |
| 26.136 Genomic Clinical Indication Codes |
| 26.137 Genomic Disorder Carrier |
| 26.138 Genomic Finding |
| 26.139 Genomic Finding Detected |
| 26.140 Genomic Haematological Oncology Test Directory |
| 26.141 Genomic Rare and Inherited Disease Test Directory |
| 26.142 Genomic Test Codes |
| 26.143 Genomic Test Outcome Codes |
| 26.144 GMS WGS Cancer Form - Guide Test Codes |
| 26.145 GMS WGS Rare Disease Form - Guide HPO Terms |
| 26.146 GMS WGS Rare Disease Form - Guide Test Codes |
| 26.147 Histotrac Order Detail Codes |
| 26.148 iGene Variant Category |
| 26.149 NGIS Test Code |
| 26.150 NW IdentifierType |
| 26.151 Order Category |
| 26.152 Patient Encounter Trigger |
| 26.153 Patient Identity Trigger |
| 26.154 Practitioner Identifiers |
| 26.155 Pregnancy |
| 26.156 Referral Status Reason Value Set |
| 26.157 Referral Workflow Status Value Set |
| 26.158 ReportType |
| 26.159 Request Priority |
| 26.160 Service |
| 26.161 Specialty |
| 26.162 Specimen Body Site |
| 26.163 Specimen Tracking Events |
| 26.164 Specimen Type |
| 26.165 UK National Health Identifiers |
| 26.166 Yes/No |
| 26.167 Yes/No/Unknown |
| 26.168 CodeSystem for Analyser |
| 26.169 CodeSystem for Chimerism Testing (OBX-3 local codes) |
| 26.170 CodeSystem not defined or to be determined |
| 26.171 Genomic Report Section |
| 26.172 Histotrac Test Codes |
| 26.173 iGene Codes |
| 26.174 iGene Sample Sub Type |
| 26.175 iGene Test Codes |
| 26.176 iGene Variant Category |
| 26.177 MFT EPIC Question Ids |
| 26.178 NHS England Digital Genomic Test Services |
| 26.179 NHS England Genomic Clinical Indication Code |
| 26.180 NHS England Genomic Test Code |
| 26.181 NHS England Genomic Test Outcome Code |
| 26.182 North West Genomics Test Code |
| 26.183 NW GMSA Codes |
| 26.184 Referral Status Reason |
| 26.185 Referral Workflow Status |
| 26.186 Task Input/Output Parameter Type |
| 26.187 UK National Health Identifiers |
| 26.188 UK Professional License |
| 26.189 GMC Number |
| 26.190 GMP Number |
| 26.191 NHS Number |
| 26.192 ODS Code |
| 26.193 ODS Site Code |
| 26.194 Genomic Clinical Indication (M*) to Digital Genomic Test Services (TP) |
| 26.195 Genomic Clinical Indication to Genomic Test Code (narrower) |
| 26.196 Genomic Test Code (M*) to Digital Genomic Test Services (GT) |
| 26.197 GMS WGS Guide HPO Terms to SNOMED CT |
| 26.198 Sample Body Site (SNOMED) to iGene Specimen Sub Type |
| 26.199 Sample Type (SNOMED) to iGene Specimen Type |
| 26.200 Clinical and Genomic Workflow |
| 26.201 Collect Specimen - Biopsy Procedure for obtaining a specimen, part of a diagnostic pathway. Day case admission. |
| 26.202 Genomic Test Order Process including order entry and transmission of the order |
| 26.203 Genomic Test Report Process |
| 26.204 AuditEvent Mobile Query Existing Data [PCC-44] |
| 26.205 AuditEvent Placer Order Management [LAB-1] V2/FHIR/V2 Order |
| 26.206 Binary Sample PDF |
| 26.207 Bundle 'Event Message' - Patient Update |
| 26.208 Bundle 'Message' - Genomics Order Reply |
| 26.209 Bundle 'Message' - Genomics Order Reply Acknowledgement |
| 26.210 Bundle 'Transaction' - Genomics Order Asynchronous Message Reply Acknowledgement |
| 26.211 Bundle - Conditions for a Patient QEDm |
| 26.212 Bundle - Form Search Results SDC |
| 26.213 Bundle - Genomic Diagnostic Implication for a Patient QEDm |
| 26.214 Bundle - Genomic Variant for a Patient QEDm |
| 26.215 Bundle - Genomic Variant Gene = NTHL1 QEDm |
| 26.216 Bundle - Patient Search Results by Medical Record Number PDQ |
| 26.217 Bundle - Patient Search Results by NHS Number PDQ |
| 26.218 Composition - Genomics Report ctDNA UGR |
| 26.219 Condition - Carcinoma |
| 26.220 Condition - Lynch Syndrome |
| 26.221 Consanguinity (type=CE) |
| 26.222 Diagnostic Report ctDNA Example |
| 26.223 Diagnostic Report Example. |
| 26.224 Document Reference Laboratory Report ctDNA |
| 26.225 Endpoint EPIC |
| 26.226 Endpoint iGene |
| 26.227 Endpoint RIE |
| 26.228 Example of a Message Acknowledgement |
| 26.229 Example of a Message Search |
| 26.230 Family Genetic Group - dWGS Trio r26000000203 |
| 26.231 Family Genetic Group - London family (Duo) |
| 26.232 Family Genetic Group - London family (Trio) |
| 26.233 FamilyMemberHistory - Cersei London (mother of Baby London) |
| 26.234 FamilyMemberHistory - Jaime Lancaster (father of Baby London) |
| 26.235 FamilyMemberHistory - Lyarra Nottingham |
| 26.236 FamilyMemberHistory - Rob LEEDS |
| 26.237 FamilyMemberHistory - Six Editestpatient (p26000000106) |
| 26.238 FamilyMemberHistory - Thirteen Editestpatient (p26000000105) |
| 26.239 FHIR RESTful POST ServiceRequest |
| 26.240 Genomic Report BRCA1 Variant Example |
| 26.241 Genomic Report Ovarian Carcinoma Diagnostic Implication Example |
| 26.242 Genomic Study (Panel) - Cystic Fibrosis |
| 26.243 Genomic Study (Panel) - Lynch Syndrome |
| 26.244 Genomic Study Analysis - ctDNA EGFR dPCR |
| 26.245 Genomic Study Panel - ctDNA 431 Present |
| 26.246 Genomic Study Panel - ctDNA 971 Failed |
| 26.247 Laboratory Analyte Result - BCRABL |
| 26.248 Laboratory Analyte Result BCRABL Invalid Example |
| 26.249 Laboratory Analyte Result BCRABL Valid Example |
| 26.250 MCV - Mean corpuscular volume |
| 26.251 Message Header - Genomic Order ctDNA O21 |
| 26.252 Message Header - Genomic Order ctDNA R01 |
| 26.253 Message Header - Genomic Order Reply fatal |
| 26.254 Message Header - Genomic Order Reply fatal Acknowledgement |
| 26.255 Message Header - Genomic Order Reply Transient |
| 26.256 Message Header - Genomic Report |
| 26.257 Message Header - Patient |
| 26.258 Molecular Consequence - Loss of Heterozygosity (BRCA1) |
| 26.259 Observation - Lynch Syndrome Mutation Finding |
| 26.260 Order Tracking Number (type=ST) |
| 26.261 Organization MANCHESTER UNIVERSITY NHS FOUNDATION TRUST |
| 26.262 Organization North West GMSA |
| 26.263 Output from a FHIR Validation |
| 26.264 Parameters Expansion Profile |
| 26.265 Patient - Birmingham |
| 26.266 Patient - Bolton |
| 26.267 Patient - Congleton |
| 26.268 Patient - Fetus London |
| 26.269 Patient - Lancaster |
| 26.270 Patient - London |
| 26.271 Patient - Ned Liverpool NHS Number: 9737383206 |
| 26.272 Patient - Northwich |
| 26.273 Patient - Nottingham |
| 26.274 Patient - Rob Leeds NHS Number: 9737383222 |
| 26.275 Patient - Sansa Manchester NHS Number: 9737383192 |
| 26.276 Patient - Theon Sheffield NHS Number: 9737873858 |
| 26.277 Patient - Warrington |
| 26.278 Patient - Wrexham |
| 26.279 PractitionerRole C9999998 Example |
| 26.280 PractitionerRole Result INTERPRETER |
| 26.281 Pregnancy Expected Delivery Date (type=DT) |
| 26.282 Procedure - Liver Biopsy |
| 26.283 RelatedPerson Birmingham-Lancaster |
| 26.284 RelatedPerson Birmingham-London |
| 26.285 RelatedPerson Lancaster-London |
| 26.286 RelatedPerson London-Lancaster |
| 26.287 RelatedPerson Mother Cersei London |
| 26.288 RelatedPerson Wrexham-Lancaster |
| 26.289 RelatedPerson Wrexham-London |
| 26.290 ServiceRequest ctDNA Example |
| 26.291 Shire Cytogenetics Report R01 - Future Structured Example |
| 26.292 Shire Cytogenetics Report R01 - Future Structured Example (FISH) |
| 26.293 Specimen ctDNA Example |
| 26.294 Task Genomic Test Completed |
| 26.295 Task Genomic Test Requested |
| 26.296 Variant - ctDNA |
| 26.297 Variant - ctDNA Intragenic Copy Number Variant (FBN1) |
| 26.298 Variant - ctDNA Multigenic Copy Number Variant |
| 26.299 Variant - ctDNA Small Variant (BRCA1) |
| 26.300 Variant - ctDNA Structural Variant |
| 26.301 Bundle Message - Order Status (O51), accepted |
| 26.302 Bundle Message - Order Status (O51), declined |
| 26.303 Bundle Message - Order Status (O51), declined after acceptance |
| 26.304 Bundle Message - Order Status (O51), outcome |
| 26.305 Message Header - Order Status (O51), accepted |
| 26.306 Message Header - Order Status (O51), declined |
| 26.307 Message Header - Order Status (O51), declined after acceptance |
| 26.308 Message Header - Order Status (O51), outcome |
| 26.309 Task Genomic Test Accepted |
| 26.310 Task Genomic Test Declined |
| 26.311 Task Genomic Test Declined after acceptance (sample unsuitable) |
| 26.312 Bundle 'Message' - Filler Order Message |
| 26.313 Bundle 'Message' - Filler Order Message |
| 26.314 Bundle 'Message' - Genomics Order Reply |
| 26.315 Bundle 'Message' - Genomics Order with Attachment |
| 26.316 Bundle 'Message' - Genomics Order with Coded Entries |
| 26.317 Bundle 'SearchSet' - Genomics Order |
| 26.318 Document Reference Laboratory Order |
| 26.319 Encounter 'episode/stay' Example |
| 26.320 Message Header - Genomic Order |
| 26.321 Message Header - Genomic Order Reply ok |
| 26.322 Patient - OctaviaCHISLETT NHS Number: 9449305552 |
| 26.323 PractitionerRole C3456789 Example |
| 26.324 ServiceRequest Attachment Example |
| 26.325 ServiceRequest Coded Entries Example |
| 26.326 Specimen Example |
| 26.327 Bundle 'Message' - Genomics Report |
| 26.328 Diagnostic Report Example. |
| 26.329 Document Reference Laboratory Report |
| 26.330 Message Header - Genomic Report |
| 26.331 Bundle 'Message' - Genomics Order ctDNA O21 |
| 26.332 Bundle 'Message' - Genomics Report ctDNA R01 |
| 26.333 Bundle `Document` - Genomics Report ctDNA |
| 26.334 Bundle `Document` - Genomics Report Inherited MMR deficiency (Lynch syndrome) |
| 26.335 Bundle `Document` - Genomics Report Targeted Variant |
| 26.336 Composition - Genomics Report LynchSyndrome |
| 26.337 Composition - Genomics Report Octavia CHISLETT |
| 26.338 DiagnosticImplication - Cystic Fibrosis Carrier |
| 26.339 DiagnosticImplication - Lynch Syndrome |
| 26.340 Genomic Study - Cystic Fibrosis |
| 26.341 Genomic Study - Lynch Syndrome |
| 26.342 Variant - CFTR |
| 26.343 Variant - NTHL1 |
| 26.344 748683741 |
| 26.345 EPIC-OBR-1 Example |
| 26.346 EPIC-OBX-10 Example |
| 26.347 EPIC-OBX-11 Example |
| 26.348 EPIC-OBX-2 Example |
| 26.349 EPIC-OBX-4 Example |
| 26.350 EPIC-OBX-6 Example |
| 26.351 EPIC-OBX-7 Example |
| 26.352 EPIC-OBX-8 Example |
| 26.353 Genomic General Ask At Order Entry Response - Octavia CHISLETT |
| 26.354 Genomic Referral Category |
| 26.355 High infection risk sample |
| 26.356 Informed Consent |
| 26.357 North West Genomics Test Order Response - Octavia CHISLETT |
| 26.358 North West Genomics Test Order Response - Theon SHEFFIELD |
| 26.359 OBX Pregnancy |
| 26.360 Supervising Clinician |
| 26.361 Bundle-Bundle-NonWGSTestOrderForm-Reanalysis-Example |
| 26.362 Bundle-NonWGSScenario3-FetusAsProband-Example-FetusA |
| 26.363 Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example-FetusA |
| 26.364 Bundle-NonWGSScenario4-ProbandWithMultipleFetus-Example-FetusB |
| 26.365 Bundle-NonWGSScenario5-ProductsofConception-Example |
| 26.366 Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example |
| 26.367 Bundle-NonWGSTestOrderForm-Example |
| 26.368 Bundle-NonWGSTestOrderForm-FetalScenario-Example |
| 26.369 Bundle-NonWGSTestOrderFormQRPatientExtensions-Example |
| 26.370 Bundle-WGSTestOrderForm-Example |
| 26.371 UKCore-Bundle-MichaelJonesRequest-Example (minimal) |
| 26.372 UKCore-Bundle-MichaelJonesRequest-Example (v3 message) |
| 26.373 NRL Genomic Report for Cersei LONDON (Test NHS Number 9737383230). Original order electronic from EPIC system |
| 26.374 NRL Genomic Report for Tommen BIRMINGHAM (Test NHS Number 9737383249). Original order not electronic |
| 26.375 dWGS Sub-order - Duo (Family Member) |
| 26.376 dWGS Sub-order - Duo (Proband) |
| 26.377 dWGS Sub-order - Singleton |
| 26.378 dWGS Sub-order - Trio (Family Member 1) |
| 26.379 dWGS Sub-order - Trio (Family Member 2) |
| 26.380 dWGS Sub-order - Trio (Proband) |
| 26.381 HLA Tests - Transplant Ask At Order Entry Response - HLA Antibody Screening |
| 26.382 Chimerism Test Additional Ask At Order Entry Questions Response |
| 26.383 OMICS DSS ctDNA Test Results (R01) |
| 26.384 ctDNA UGR Phase 2 - EU Laboratory Report FHIR Document |
| 26.385 Example Document and Document Notification Message |
 26.386 Variant DSS BRCA1 |
