NHS North West Genomics
2.2.0 - ci-build
NHS North West Genomics - Local Development build (v2.2.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
Document Details
Language: en
Profile: Bundle - FHIR Document
Final Document at 2025-10-14 15:59:16+0000 by North West Genomics (Identifier: ODS Organisation Code/699X0) for Theon SHEFFIELD
Document Subject
Language: en
Profile: Patient
Theon SHEFFIELD (official) Male, DoB: 1986-09-12 ( Patient internal identifier)
| Active: | true | ||
| Other Id: | National Health Plan Identifier/9737873858 (use: official, ) | ||
| Contact Detail | SPITAL STREET SHEFFIELD S3 9LB (home) | ||
| Links: |
| ||
Document Content
Entry 2 - fullUrl = urn:uuid:2160525b-0168-4f40-8ebf-9b053052a62c
Resource Patient:
Language: en
Profile: Patient
Theon SHEFFIELD (official) Male, DoB: 1986-09-12 ( Patient internal identifier)
Active: true Other Id: National Health Plan Identifier/9737873858 (use: official, ) Contact Detail SPITAL STREET SHEFFIELD S3 9LB (home) Links:
- General Practitioner: Sheffield Medical Centre (Identifier: ODS Organisation Code/C88622)
Entry 3 - fullUrl = urn:uuid:6e26d6b3-490e-4348-9d6c-37281567d6ec
Resource ServiceRequest:
version: 1.0; Language: en
Profile: ServiceRequest
identifier: Filler Identifier/T26-59XG
requisition: Placer Group Number/R26-15AY
status: Active
intent: Order
category: Molecular genetics procedure
code: No display for ServiceRequest.code (concept: Non-Small Cell Lung Cancer, Multi-target ctDNA combined Multi-target NGS panel - small variant (EGFR, ALK, BRAF, KRAS, MET exon 14 skipping and copy number variations) and structural variant (ROS1, RET, ALK, NTRK1, NTRK2, NTRK3, MET exon 14 skipping))
subject: Theon SHEFFIELD
requester: PractitionerRole: specialty = General Surgery
performer: Identifier: ODS Organisation Code/699X0
Entry 4 - fullUrl = urn:uuid:4446ab81-35ef-49cb-b2fe-1d6f1a0dcc02
Resource PractitionerRole:
Language: en
Profile: PractitionerRole
practitioner: Sheffield Lung Doctor (Identifier: GMC Number/C9999998)
organization: Identifier: ODS Organisation Code/RHQ
specialty: General Surgery
Entry 5 - fullUrl = urn:uuid:b930b4c4-327a-4728-8bb9-f90061914cc5
Resource Specimen:
version: 1.0; Language: en
Profile: Specimen
identifier: Filler Identifier/S26-1K1Q
status: Available
type: Blood specimen
subject: Theon SHEFFIELD
receivedTime: 2026-06-30
Collections
Collected[x] 2026-06-29
Entry 6 - fullUrl = urn:uuid:0a6ad8ec-b069-4a65-8c65-c7569d8413e3
Resource DiagnosticReport:
version: 1.0; Language: en
Profile: Diagnostic Report
Genetic report (Genetics)
Subject Theon SHEFFIELD (official) Male, DoB: 1986-09-12 ( Patient internal identifier) Relevant Time 2025-10-14 15:59:16+0000 Performer NW GMSA (Identifier: ODS Organisation Code/699X0) Identifier https://fhir.nwgenomics.nhs.uk/iGene/ReportIdentifier/T26-59XGPresented Form application/pdf @ urn:uuid:d6eeedd1-92d3-45b9-bf33-6401e804425f Report Details
Code Value Flags Note Relevant Time Genetic variant assessment Present Final ILLUSTRATIVE VALUES ONLY. The allelic frequency component (81258-6) is the field of primary clinical interest for a dPCR ctDNA result: it carries the mutant-allele fraction quantified directly by the assay (droplet/bead-positive fraction, Poisson-corrected), which is what a clinician uses to gauge ctDNA burden and track it serially — analogous to how VAF is used from NGS, but here derived from a targeted few-plex assay rather than sequencing depth.
2026-07-13 10:37:26+0000 DNA region of interest panel Final ILLUSTRATIVE: represents that the digital PCR assay interrogated only the EGFR exon 20 T790M hotspot position (and, in a multiplexed panel, a small number of other named hotspots such as exon 19 deletions / L858R) — not the full coding sequence of EGFR. Unlike NGS, a negative dPCR result only rules out variants at the specific positions named here; it should not be read as 'EGFR negative' more broadly. Coordinate/region detail (start/end, genome build) is omitted from this illustrative example and should be populated from the assay's validated target list in a real implementation.
2026-07-13 10:37:26+0000 Coded Conclusions:
- TARGET DETECTED AT A LEVEL REQUIRING CLINICAL ACTION
Entry 7 - fullUrl = urn:uuid:00c22e97-a226-4845-b17a-e24ec1f4f77a
Resource Observation:
Language: en
Profile: Variant (Observation)
identifier: 00c22e97-a226-4845-b17a-e24ec1f4f77a
status: Final
category: Genetics, Laboratory
code: Genetic variant assessment
subject: Theon SHEFFIELD
effective: 2026-07-13 10:37:26+0000
value: Present
note:
ILLUSTRATIVE VALUES ONLY. The allelic frequency component (81258-6) is the field of primary clinical interest for a dPCR ctDNA result: it carries the mutant-allele fraction quantified directly by the assay (droplet/bead-positive fraction, Poisson-corrected), which is what a clinician uses to gauge ctDNA burden and track it serially — analogous to how VAF is used from NGS, but here derived from a targeted few-plex assay rather than sequencing depth.
method: Digital PCR (BEAMing / OncoBEAM platform). NOTE: unlike 'Sequencing' (LOINC LA26398-0), the standard LOINC/SNOMED CT answer lists referenced by this IG do not currently include a dedicated coded answer for 'digital PCR' — captured here as free text pending a suitable coded term (e.g. a local or SNOMED CT extension) being agreed with your terminology team.
component
code: Variant category
value: Sequence Variant
component
code: Gene studied [ID]
value: EGFR
component
code: DNA change (c.HGVS)
value: NM_005228.5:c.2369C>T
component
code: DNA change type
value: substitution
component
code: Genomic source class [Type]
value: Somatic
component
code: Sample variant allelic frequency [NFr]
value: 0.42 % (Details: UCUM code% = '%')
Entry 8 - fullUrl = urn:uuid:a151b1ed-5aef-4c36-af50-987cfbd5bad4
Resource Observation:
Language: en
Profile: Genomic Observation
identifier: a151b1ed-5aef-4c36-af50-987cfbd5bad4
status: Final
category: Genetics
code: DNA region of interest panel
subject: Theon SHEFFIELD
effective: 2026-07-13 10:37:26+0000
note:
ILLUSTRATIVE: represents that the digital PCR assay interrogated only the EGFR exon 20 T790M hotspot position (and, in a multiplexed panel, a small number of other named hotspots such as exon 19 deletions / L858R) — not the full coding sequence of EGFR. Unlike NGS, a negative dPCR result only rules out variants at the specific positions named here; it should not be read as 'EGFR negative' more broadly. Coordinate/region detail (start/end, genome build) is omitted from this illustrative example and should be populated from the assay's validated target list in a real implementation.
component
code: Gene studied [ID]
value: EGFR
component
code: Transcript reference sequence [ID]
value: EGFR transcript NM_005228.5
Entry 9 - fullUrl = urn:uuid:13028359-6a38-4dff-8978-55a57dbdfb56
Resource DocumentReference:
Language: en
Profile: DocumentReference
identifier:
http://www.example.org/documentreference/identifier/94bf65ba-cd6c-4601-b339-6d547f424646status: Current
type: Genetic report
subject: Theon SHEFFIELD
date: 2025-10-14 15:59:16+0000
custodian: NW GMSA (Identifier: ODS Organisation Code/699X0)
content
Attachments
ContentType Url application/pdf Binary: application/pdf (845 bytes base64)
Entry 10 - fullUrl = urn:uuid:d6eeedd1-92d3-45b9-bf33-6401e804425f
Resource Binary:
Language: en
Profile: Binary
contentType: application/pdf
data:
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