NHS North West Genomics
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: ctDNA UGR Phase 2 - EU Laboratory Report FHIR Document

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        "title" : "PACKAGE: M4.14 - Non-Small Cell Lung Cancer, Multi-target ctDNA combined Multi-target NGS panel - small variant (EGFR, ALK, BRAF, KRAS, MET exon 14 skipping and copy number variations) and structural variant (ROS1, RET, ALK, NTRK1, NTRK2, NTRK3, MET exon - Laboratory Report and Genomic Findings",
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              "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>PACKAGE: M4.14 - Non-Small Cell Lung Cancer, Multi-target ctDNA combined Multi-target NGS panel - small variant (EGFR, ALK, BRAF, KRAS, MET exon 14 skipping and copy number variations) and structural variant (ROS1, RET, ALK, NTRK1, NTRK2, NTRK3, MET exon</b> (M4.14), requested by Leeds Teaching Hospitals NHS Trust.</p><p>Placer order number: 1234-RR8. Filler order number: T26-59X2.</p><p>Result: <b>FAILURE</b>. Reported by NHS North West Genomics, interpreted by Jonathan Edgerley.</p></div>"
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              "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><table class=\"grid\"><tr><th>Gene</th><th>DNA change (c.HGVS)</th><th>Protein change (p.HGVS)</th><th>Change type</th><th>Zygosity</th><th>Classification</th></tr><tr><td>BRCA1</td><td>NM_007294.3(BRCA1):c.68_69del</td><td>p.(Glu23ValfsTer17)</td><td>deletion</td><td>heterozygous</td><td>Pathogenic</td></tr><tr><td>FBN1</td><td>NM_000138.4(FBN1):exon13_to_exon15del</td><td>-</td><td>copy_number_variation</td><td>-</td><td>Pathogenic</td></tr><tr><td>-</td><td>-</td><td>-</td><td>copy_number_variation</td><td>-</td><td>Pathogenic</td></tr><tr><td>-</td><td>-</td><td>-</td><td>deletion</td><td>-</td><td>Pathogenic</td></tr></table></div>"
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          "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Patient_null\"> </a><p><b>Rob LEEDS</b></p><p>NHS number: 9737383222</p><p>Date of birth: 1978-01-17</p><p>Sex: Male</p><p>Postcode: LS1 3EX</p></div>"
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          "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"ServiceRequest_null\"> </a><p class=\"res-header-id\"><b>Generated Narrative: ServiceRequest </b></p><p><b>identifier</b>: Placer Identifier/1234-RR8, Filler Identifier/T26-59X2</p><p><b>status</b>: Completed</p><p><b>intent</b>: Order</p><p><b>category</b>: <span title=\"Codes:{http://snomed.info/sct 116148004}\">Molecular genetics procedure</span></p><p><b>code</b>: <span title=\"Codes:{https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory M4.14}\">Non-Small Cell Lung Cancer, Multi-target ctDNA combined Multi-target NGS panel - small variant (EGFR, ALK, BRAF, KRAS, MET exon 14 skipping and copy number variations) and structural variant (ROS1, RET, ALK, NTRK1, NTRK2, NTRK3, MET exon 14 skipping)</span></p><p><b>subject</b>: <a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-84980fe1-25f9-43a9-bd28-3401796df680\">Rob LEEDS  Male, DoB: 1978-01-17 ( National Health Plan Identifier)</a></p><p><b>encounter</b>: <a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-8f29ff05-48f2-4f1a-a8be-7022dda2b74a\">Encounter: identifier = Account number; status = finished; class = observation encounter (ActCode#OBSENC)</a></p><p><b>requester</b>: Leeds Teaching Hospitals NHS Trust (Identifier: <a href=\"NamingSystem-ods-organization-code-namingsystem.html\" title=\"The identifier system for an Organisation registered with the Organisation Data Service (ODS).\">ODS Organisation Code</a>/RR8)</p><p><b>reasonCode</b>: <span title=\"Codes:{https://fhir.nwgenomics.nhs.uk/CodeSystem/GenomicClinicalIndication M4}\">Non-Small Cell Lung Cancer</span></p><p><b>specimen</b>: <a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-ad34dc51-cc4e-407c-a003-276366ef9897\">Specimen: status = available; type = Whole blood specimen; receivedTime = 2026-07-06 00:00:00+0000</a></p></div>"
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    },
    {
      "fullUrl" : "urn:uuid:b412c3a9-d963-46b4-99d4-bb14f6065702",
      "resource" : {
        "resourceType" : "DocumentReference",
        "language" : "en",
        "text" : {
          "status" : "generated",
          "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"DocumentReference_null\"> </a><p class=\"res-header-id\"><b>Generated Narrative: DocumentReference </b></p><p><b>identifier</b>: Filler Identifier/T26-59X2</p><p><b>status</b>: Current</p><p><b>type</b>: <span title=\"Codes:{http://snomed.info/sct 1054161000000101}\">Genetic report</span></p><p><b>subject</b>: <a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-84980fe1-25f9-43a9-bd28-3401796df680\">Rob LEEDS  Male, DoB: 1978-01-17 ( National Health Plan Identifier)</a></p><p><b>date</b>: 2026-07-14 15:59:16+0000</p><p><b>custodian</b>: Identifier: <a href=\"NamingSystem-ods-organization-code-namingsystem.html\" title=\"The identifier system for an Organisation registered with the Organisation Data Service (ODS).\">ODS Organisation Code</a>/699X0</p><blockquote><p><b>content</b></p><h3>Attachments</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>ContentType</b></td><td><b>Url</b></td></tr><tr><td style=\"display: none\">*</td><td>application/pdf</td><td><a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-4b8a115b-cd0a-487b-ac8e-5b9e4f4f78d4\">Binary: application/pdf (845 bytes base64)</a></td></tr></table></blockquote><h3>Contexts</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Encounter</b></td><td><b>Period</b></td><td><b>SourcePatientInfo</b></td><td><b>Related</b></td></tr><tr><td style=\"display: none\">*</td><td><a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-8f29ff05-48f2-4f1a-a8be-7022dda2b74a\">Encounter: identifier = Account number; status = finished; class = observation encounter (ActCode#OBSENC)</a></td><td>2026-07-14 15:59:16+0000 --&gt; 2026-07-14 15:59:16+0000</td><td>Identifier: Medical record number/RXR0817610</td><td><a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-b3bdaa63-3016-4115-97a4-e89f6f9731e0\">ServiceRequest Non-Small Cell Lung Cancer, Multi-target ctDNA combined Multi-target NGS panel - small variant (EGFR, ALK, BRAF, KRAS, MET exon 14 skipping and copy number variations) and structural variant (ROS1, RET, ALK, NTRK1, NTRK2, NTRK3, MET exon 14 skipping)</a></td></tr></table></div>"
        },
        "identifier" : [
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            "type" : {
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                  "system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
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            "system" : "https://fhir.nwgenomics.nhs.uk/iGene/ReportIdentifier",
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            "assigner" : {
              "identifier" : {
                "system" : "https://fhir.nhs.uk/Id/ods-organization-code",
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        "status" : "current",
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          "coding" : [
            {
              "system" : "http://snomed.info/sct",
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              "display" : "Genetic report"
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        },
        "subject" : {
          "reference" : "urn:uuid:84980fe1-25f9-43a9-bd28-3401796df680",
          "identifier" : {
            "type" : {
              "coding" : [
                {
                  "system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
                  "code" : "NH"
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            "system" : "https://fhir.nhs.uk/Id/nhs-number",
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        },
        "date" : "2026-07-14T15:59:16+00:00",
        "custodian" : {
          "type" : "Organization",
          "identifier" : {
            "system" : "https://fhir.nhs.uk/Id/ods-organization-code",
            "value" : "699X0"
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        },
        "content" : [
          {
            "attachment" : {
              "contentType" : "application/pdf",
              "url" : "urn:uuid:4b8a115b-cd0a-487b-ac8e-5b9e4f4f78d4"
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          }
        ],
        "context" : {
          "encounter" : [
            {
              "reference" : "urn:uuid:8f29ff05-48f2-4f1a-a8be-7022dda2b74a",
              "type" : "Encounter",
              "identifier" : {
                "type" : {
                  "coding" : [
                    {
                      "system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
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                "value" : "SP26-01847"
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            "start" : "2026-07-14T15:59:16+00:00",
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            "identifier" : {
              "type" : {
                "coding" : [
                  {
                    "system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
                    "code" : "MR"
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              "value" : "RXR0817610",
              "assigner" : {
                "identifier" : {
                  "system" : "https://fhir.nhs.uk/Id/ods-organization-code",
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          "related" : [
            {
              "reference" : "urn:uuid:b3bdaa63-3016-4115-97a4-e89f6f9731e0",
              "type" : "ServiceRequest",
              "identifier" : {
                "type" : {
                  "coding" : [
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                      "system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
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      "resource" : {
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          "profile" : [
            🔗 "https://fhir.nwgenomics.nhs.uk/StructureDefinition/DiagnosticReport"🔗 ,
            "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report"
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        "text" : {
          "status" : "generated",
          "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"DiagnosticReport_null\"> </a><p class=\"res-header-id\"><b>Generated Narrative: DiagnosticReport </b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profiles: <a href=\"StructureDefinition-DiagnosticReport.html\">Diagnostic Report</a>, <a href=\"http://hl7.org/fhir/uv/genomics-reporting/STU3/StructureDefinition-genomic-report.html\">Genomic Report</a></p></div><h2><span title=\"Codes:{https://fhir.nwgenomics.nhs.uk/CodeSystem/IGEAP ctDNA_M4}, {https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory M4.14}, {http://loinc.org 51969-4}\">PACKAGE: M4.14 - Non-Small Cell Lung Cancer, Multi-target ctDNA combined Multi-target NGS panel - small variant (EGFR, ALK, BRAF, KRAS, MET exon 14 skipping and copy number variations) and structural variant (ROS1, RET, ALK, NTRK1, NTRK2, NTRK3, MET exon</span> (<span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span>) </h2><table class=\"grid\"><tr><td>Subject</td><td>Rob LEEDS  Male, DoB: 1978-01-17 ( National Health Plan Identifier)</td></tr><tr><td>Relevant Time</td><td>2026-07-14 15:59:16+0000</td></tr><tr><td>Reported</td><td>2026-07-14 15:59:16+0000</td></tr><tr><td>Performer</td><td> NHS North West Genomics (Identifier: <a href=\"NamingSystem-ods-organization-code-namingsystem.html\" title=\"The identifier system for an Organisation registered with the Organisation Data Service (ODS).\">ODS Organisation Code</a>/699X0)</td></tr><tr><td>Identifier</td><td> Filler Identifier/T26-59X2</td></tr><tr><td>Presented Form</td><td> application/pdf @ <a href=\"urn:uuid:4b8a115b-cd0a-487b-ac8e-5b9e4f4f78d4\">urn:uuid:4b8a115b-cd0a-487b-ac8e-5b9e4f4f78d4 <img src=\"external.png\" alt=\"icon\" style=\"vertical-align: baseline\"/></a></td></tr></table><p><b>Report Details</b></p><table class=\"grid\"><tr><td><b>Code</b></td><td><b>Value</b></td><td><b>Flags</b></td></tr><tr><td><a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-23b67e47-926e-4382-957d-74cd2d715c57\"><span title=\"Codes:{http://loinc.org 81306-3}\">Variables that apply to the overall study</span></a></td><td/><td>Final</td></tr><tr><td><a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-f866eb21-c93b-4ea6-8e79-780149b39c6e\"><span title=\"Codes:{http://loinc.org 69548-6}\">Genetic variant assessment</span></a></td><td><span title=\"Codes:{http://loinc.org LA9633-4}\">Present</span></td><td>Final</td></tr><tr><td><a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-2728faff-ad7c-40af-9f8d-475946d01157\"><span title=\"Codes:{http://loinc.org 69548-6}\">Genetic variant assessment</span></a></td><td><span title=\"Codes:{http://loinc.org LA9633-4}\">Present</span></td><td>Final</td></tr><tr><td><a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-faf18f06-de32-49e1-8fb1-a8e87df23a51\"><span title=\"Codes:{http://loinc.org 69548-6}\">Genetic variant assessment</span></a></td><td><span title=\"Codes:{http://loinc.org LA9633-4}\">Present</span></td><td>Final</td></tr><tr><td><a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-7f70a970-2deb-47c6-9b4d-a252bda6bdd6\"><span title=\"Codes:{http://loinc.org 69548-6}\">Genetic variant assessment</span></a></td><td><span title=\"Codes:{http://loinc.org LA9633-4}\">Present</span></td><td>Final</td></tr></table><p><b>Coded Conclusions:</b></p><ul><li><span title=\"Codes:{https://fhir.nwgenomics.nhs.uk/CodeSystem/GenomicTestOutcomeCode 971}\">FAILURE</span></li></ul></div>"
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                "system" : "http://terminology.hl7.org/CodeSystem/v2-0074",
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              "display" : "PACKAGE: M4.14 - Non-Small Cell Lung Cancer, Multi-target ctDNA combined Multi-target NGS panel - small variant (EGFR, ALK, BRAF, KRAS, MET exon 14 skipping and copy number variations) and structural variant (ROS1, RET, ALK, NTRK1, NTRK2, NTRK3, MET exon"
            },
            {
              "system" : "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory",
              "code" : "M4.14",
              "display" : "PACKAGE: M4.14 - Non-Small Cell Lung Cancer, Multi-target ctDNA combined Multi-target NGS panel - small variant (EGFR, ALK, BRAF, KRAS, MET exon 14 skipping and copy number variations) and structural variant (ROS1, RET, ALK, NTRK1, NTRK2, NTRK3, MET exon"
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          "reference" : "urn:uuid:84980fe1-25f9-43a9-bd28-3401796df680",
          "identifier" : {
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        "issued" : "2026-07-14T15:59:16+00:00",
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            "identifier" : {
              "system" : "https://fhir.nhs.uk/Id/ods-organization-code",
              "value" : "699X0"
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            "display" : "NHS North West Genomics"
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        "resultsInterpreter" : [
          {
            "display" : "Jonathan Edgerley"
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          {
            "reference" : "urn:uuid:ad34dc51-cc4e-407c-a003-276366ef9897",
            "type" : "Specimen"
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        ],
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          {
            "reference" : "urn:uuid:23b67e47-926e-4382-957d-74cd2d715c57",
            "type" : "Observation",
            "display" : "Variables that apply to the overall study"
          },
          {
            "reference" : "urn:uuid:f866eb21-c93b-4ea6-8e79-780149b39c6e",
            "type" : "Observation"
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          {
            "reference" : "urn:uuid:2728faff-ad7c-40af-9f8d-475946d01157",
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          {
            "reference" : "urn:uuid:faf18f06-de32-49e1-8fb1-a8e87df23a51",
            "type" : "Observation"
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          {
            "reference" : "urn:uuid:7f70a970-2deb-47c6-9b4d-a252bda6bdd6",
            "type" : "Observation"
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          {
            "coding" : [
              {
                "system" : "https://fhir.nwgenomics.nhs.uk/CodeSystem/GenomicTestOutcomeCode",
                "code" : "971",
                "display" : "FAILURE"
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            "contentType" : "application/pdf",
            "url" : "urn:uuid:4b8a115b-cd0a-487b-ac8e-5b9e4f4f78d4"
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      "fullUrl" : "urn:uuid:23b67e47-926e-4382-957d-74cd2d715c57",
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        "meta" : {
          "profile" : [
            🔗 "https://fhir.nwgenomics.nhs.uk/StructureDefinition/GenomicStudyPanel"
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        "language" : "en",
        "text" : {
          "status" : "generated",
          "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_null\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation </b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-GenomicStudyPanel.html\">Genomic Study Panel</a></p></div><p><b>identifier</b>: Filler Identifier/T26-59X2</p><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 81306-3}\">Variables that apply to the overall study</span></p><p><b>subject</b>: <a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-84980fe1-25f9-43a9-bd28-3401796df680\">Rob LEEDS  Male, DoB: 1978-01-17 ( National Health Plan Identifier)</a></p><p><b>effective</b>: 2026-07-14 15:59:16+0000</p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 51967-8}\">Genetic disease assessed [ID]</span></p><p><b>value</b>: <span title=\"Codes:{https://fhir.nwgenomics.nhs.uk/CodeSystem/GenomicClinicalIndication M4}\">Non-Small Cell Lung Cancer</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 51968-6}\">Discrete variation analysis overall interpretation</span></p><p><b>value</b>: <span title=\"Codes:{https://fhir.nwgenomics.nhs.uk/CodeSystem/GenomicTestOutcomeCode 971}\">FAILURE</span></p></blockquote></div>"
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            "type" : {
              "coding" : [
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                  "system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
                  "code" : "FILL"
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            "system" : "https://fhir.nwgenomics.nhs.uk/iGene/ReportIdentifier",
            "value" : "T26-59X2",
            "assigner" : {
              "identifier" : {
                "system" : "https://fhir.nhs.uk/Id/ods-organization-code",
                "value" : "699X0"
              }
            }
          }
        ],
        "status" : "final",
        "category" : [
          {
            "coding" : [
              {
                "system" : "http://terminology.hl7.org/CodeSystem/observation-category",
                "code" : "laboratory"
              }
            ]
          },
          {
            "coding" : [
              {
                "system" : "http://terminology.hl7.org/CodeSystem/v2-0074",
                "code" : "GE"
              }
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          }
        ],
        "code" : {
          "coding" : [
            {
              "system" : "http://loinc.org",
              "code" : "81306-3",
              "display" : "Variables that apply to the overall study"
            }
          ]
        },
        "subject" : {
          "reference" : "urn:uuid:84980fe1-25f9-43a9-bd28-3401796df680",
          "identifier" : {
            "type" : {
              "coding" : [
                {
                  "system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
                  "code" : "NH"
                }
              ]
            },
            "system" : "https://fhir.nhs.uk/Id/nhs-number",
            "value" : "9737383222"
          }
        },
        "effectiveDateTime" : "2026-07-14T15:59:16+00:00",
        "component" : [
          {
            "code" : {
              "coding" : [
                {
                  "system" : "http://loinc.org",
                  "code" : "51967-8"
                }
              ]
            },
            "valueCodeableConcept" : {
              "coding" : [
                {
                  "system" : "https://fhir.nwgenomics.nhs.uk/CodeSystem/GenomicClinicalIndication",
                  "code" : "M4"
                }
              ]
            }
          },
          {
            "code" : {
              "coding" : [
                {
                  "system" : "http://loinc.org",
                  "code" : "51968-6"
                }
              ]
            },
            "valueCodeableConcept" : {
              "coding" : [
                {
                  "system" : "https://fhir.nwgenomics.nhs.uk/CodeSystem/GenomicTestOutcomeCode",
                  "code" : "971",
                  "display" : "FAILURE"
                }
              ]
            }
          }
        ]
      }
    },
    {
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          "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_f866eb21-c93b-4ea6-8e79-780149b39c6e\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation f866eb21-c93b-4ea6-8e79-780149b39c6e</b></p><a name=\"f866eb21-c93b-4ea6-8e79-780149b39c6e\"> </a><a name=\"hcf866eb21-c93b-4ea6-8e79-780149b39c6e\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profiles: <a href=\"http://hl7.org/fhir/uv/genomics-reporting/STU3/StructureDefinition-variant.html\">Variant</a>, <a href=\"StructureDefinition-Observation.html\">Observation</a></p></div><p><b>identifier</b>: Filler Identifier/T26-59X2-1</p><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69548-6}\">Genetic variant assessment</span></p><p><b>subject</b>: <a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-84980fe1-25f9-43a9-bd28-3401796df680\">Rob LEEDS  Male, DoB: 1978-01-17 ( National Health Plan Identifier)</a></p><p><b>effective</b>: 2026-07-14 15:59:16+0000</p><p><b>performer</b>: <a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-223a5b16-7751-44a3-a890-ac1d6085ade5\">Organization NHS North West Genomics</a></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA9633-4}\">Present</span></p><p><b>method</b>: <span title=\"Codes:{http://loinc.org LA26398-0}\">Sequencing</span></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48018-6}\">Gene studied [ID]</span></p><p><b>value</b>: <span title=\"Codes:{http://www.genenames.org HGNC:1100}\">BRCA1</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48002-0}\">Genomic source class [Type]</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA6683-2}\">Germline</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48013-7}\">Genomic reference sequence [ID]</span></p><p><b>value</b>: <span title=\"Codes:{http://www.ncbi.nlm.nih.gov/refseq NC_000017.10}\">NC_000017.10</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 92822-6}\">Genomic coordinate system [Type]</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA30102-0}\">1-based character counting</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69547-8}\">Genomic ref allele [ID]</span></p><p><b>value</b>: TCT</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69551-0}\">Genomic alt allele [ID]</span></p><p><b>value</b>: T</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48019-4}\">DNA change type</span></p><p><b>value</b>: <span title=\"Codes:{http://www.sequenceontology.org SO:0000159}\">deletion</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 51958-7}\">Transcript reference sequence [ID]</span></p><p><b>value</b>: <span title=\"Codes:{http://www.ncbi.nlm.nih.gov/refseq NM_007294.3}\">NM_007294.3</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48004-6}\">DNA change (c.HGVS)</span></p><p><b>value</b>: <span title=\"Codes:{http://varnomen.hgvs.org NM_007294.3(BRCA1):c.68_69del}\">NM_007294.3(BRCA1):c.68_69del</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48005-3}\">Amino acid change (pHGVS)</span></p><p><b>value</b>: <span title=\"Codes:{http://varnomen.hgvs.org p.(Glu23ValfsTer17)}\">p.(Glu23ValfsTer17)</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 81290-9}\">Genomic DNA change (gHGVS)</span></p><p><b>value</b>: <span title=\"Codes:{http://varnomen.hgvs.org g.41276047_41276048del}\">g.41276047_41276048del</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 53037-8}\">Genetic variation clinical significance [Imp]</span></p><p><b>value</b>: <span title=\"Codes:\">Pathogenic</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 94186-4}\">Origin of germline genetic variant [Type]</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA26320-4}\">Maternal</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 81254-5}\">Genomic allele start-end</span></p><p><b>value</b>: 41276046-?</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 81258-6}\">Sample variant allelic frequency</span></p><p><b>value</b>: 0.33 decimal</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 53034-5}\">Allelic state</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA6706-1}\">heterozygous</span></p></blockquote></div>"
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          "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_2728faff-ad7c-40af-9f8d-475946d01157\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation 2728faff-ad7c-40af-9f8d-475946d01157</b></p><a name=\"2728faff-ad7c-40af-9f8d-475946d01157\"> </a><a name=\"hc2728faff-ad7c-40af-9f8d-475946d01157\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profiles: <a href=\"http://hl7.org/fhir/uv/genomics-reporting/STU3/StructureDefinition-variant.html\">Variant</a>, <a href=\"StructureDefinition-Observation.html\">Observation</a></p></div><p><b>identifier</b>: Filler Identifier/T26-59X2-2</p><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69548-6}\">Genetic variant assessment</span></p><p><b>subject</b>: <a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-84980fe1-25f9-43a9-bd28-3401796df680\">Rob LEEDS  Male, DoB: 1978-01-17 ( National Health Plan Identifier)</a></p><p><b>effective</b>: 2026-07-14 15:59:16+0000</p><p><b>performer</b>: <a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-223a5b16-7751-44a3-a890-ac1d6085ade5\">Organization NHS North West Genomics</a></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA9633-4}\">Present</span></p><p><b>method</b>: <span title=\"Codes:{http://loinc.org LA26398-0}\">Sequencing</span></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48018-6}\">Gene studied [ID]</span></p><p><b>value</b>: <span title=\"Codes:{http://www.genenames.org HGNC:3603}\">FBN1</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48002-0}\">Genomic source class [Type]</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA6683-2}\">Germline</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48013-7}\">Genomic reference sequence [ID]</span></p><p><b>value</b>: <span title=\"Codes:{http://www.ncbi.nlm.nih.gov/refseq NC_000015.9}\">NC_000015.9</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 92822-6}\">Genomic coordinate system [Type]</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA30102-0}\">1-based character counting</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69547-8}\">Genomic ref allele [ID]</span></p><p><b>value</b>: C</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69551-0}\">Genomic alt allele [ID]</span></p><p><b>value</b>: &lt;DEL&gt;</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48019-4}\">DNA change type</span></p><p><b>value</b>: <span title=\"Codes:{http://www.sequenceontology.org SO:0001019}\">copy_number_variation</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 51958-7}\">Transcript reference sequence [ID]</span></p><p><b>value</b>: <span title=\"Codes:{http://www.ncbi.nlm.nih.gov/refseq NM_000138.4}\">NM_000138.4</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48004-6}\">DNA change (c.HGVS)</span></p><p><b>value</b>: <span title=\"Codes:{http://varnomen.hgvs.org NM_000138.4(FBN1):exon13_to_exon15del}\">NM_000138.4(FBN1):exon13_to_exon15del</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 81290-9}\">Genomic DNA change (gHGVS)</span></p><p><b>value</b>: <span title=\"Codes:{http://varnomen.hgvs.org g.48797222_48802366del}\">g.48797222_48802366del</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 53037-8}\">Genetic variation clinical significance [Imp]</span></p><p><b>value</b>: <span title=\"Codes:\">Pathogenic</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 94186-4}\">Origin of germline genetic variant [Type]</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA26320-4}\">Maternal</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 81302-2}\">Structural variant inner start and end</span></p><p><b>value</b>: 48797221-48802366</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 81258-6}\">Sample variant allelic frequency</span></p><p><b>value</b>: 0.33 decimal</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 82155-3}\">Genomic structural variant copy number</span></p><p><b>value</b>: 1 1<span style=\"background: LightGoldenRodYellow\"> (Details: UCUM  code1 = '1')</span></p></blockquote></div>"
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          "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_7f70a970-2deb-47c6-9b4d-a252bda6bdd6\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation 7f70a970-2deb-47c6-9b4d-a252bda6bdd6</b></p><a name=\"7f70a970-2deb-47c6-9b4d-a252bda6bdd6\"> </a><a name=\"hc7f70a970-2deb-47c6-9b4d-a252bda6bdd6\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profiles: <a href=\"http://hl7.org/fhir/uv/genomics-reporting/STU3/StructureDefinition-variant.html\">Variant</a>, <a href=\"StructureDefinition-Observation.html\">Observation</a></p></div><p><b>identifier</b>: Filler Identifier/T26-59X2-4</p><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69548-6}\">Genetic variant assessment</span></p><p><b>subject</b>: <a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-84980fe1-25f9-43a9-bd28-3401796df680\">Rob LEEDS  Male, DoB: 1978-01-17 ( National Health Plan Identifier)</a></p><p><b>effective</b>: 2026-07-14 15:59:16+0000</p><p><b>performer</b>: <a href=\"Bundle-ctdna9737383222-eulab-document.html#urn-uuid-223a5b16-7751-44a3-a890-ac1d6085ade5\">Organization NHS North West Genomics</a></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA9633-4}\">Present</span></p><p><b>method</b>: <span title=\"Codes:{http://loinc.org LA26398-0}\">Sequencing</span></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48013-7}\">Genomic reference sequence [ID]</span></p><p><b>value</b>: <span title=\"Codes:{http://www.ncbi.nlm.nih.gov/refseq NC_000023.10}\">NC_000023.10</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 92822-6}\">Genomic coordinate system [Type]</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA30102-0}\">1-based character counting</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69547-8}\">Genomic ref allele [ID]</span></p><p><b>value</b>: T</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69551-0}\">Genomic alt allele [ID]</span></p><p><b>value</b>: &lt;DEL&gt;</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48019-4}\">DNA change type</span></p><p><b>value</b>: <span title=\"Codes:{http://www.sequenceontology.org SO:0000159}\">deletion</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 81290-9}\">Genomic DNA change (gHGVS)</span></p><p><b>value</b>: <span title=\"Codes:{http://varnomen.hgvs.org g.100652797_153792676del}\">g.100652797_153792676del</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 53037-8}\">Genetic variation clinical significance [Imp]</span></p><p><b>value</b>: <span title=\"Codes:\">Pathogenic</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 81302-2}\">Structural variant inner start and end</span></p><p><b>value</b>: 100652796-153792676</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 81258-6}\">Sample variant allelic frequency</span></p><p><b>value</b>: 0.33 decimal</p></blockquote></div>"
        },
        "identifier" : [
          {
            "type" : {
              "coding" : [
                {
                  "system" : "http://terminology.hl7.org/CodeSystem/v2-0203",
                  "code" : "FILL"
                }
              ]
            },
            "system" : "https://fhir.nwgenomics.nhs.uk/iGene/ReportIdentifier",
            "value" : "T26-59X2-4",
            "assigner" : {
              "identifier" : {
                "system" : "https://fhir.nhs.uk/Id/ods-organization-code",
                "value" : "699X0"
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            }
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        ],
        "status" : "final",
        "category" : [
          {
            "coding" : [
              {
                "system" : "http://terminology.hl7.org/CodeSystem/observation-category",
                "code" : "laboratory"
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          {
            "coding" : [
              {
                "system" : "http://terminology.hl7.org/CodeSystem/v2-0074",
                "code" : "GE"
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            ]
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        ],
        "code" : {
          "coding" : [
            {
              "system" : "http://loinc.org",
              "code" : "69548-6",
              "display" : "Genetic variant assessment"
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          ]
        },
        "subject" : {
          "reference" : "urn:uuid:84980fe1-25f9-43a9-bd28-3401796df680"
        },
        "effectiveDateTime" : "2026-07-14T15:59:16+00:00",
        "performer" : [
          {
            "reference" : "urn:uuid:223a5b16-7751-44a3-a890-ac1d6085ade5"
          }
        ],
        "valueCodeableConcept" : {
          "coding" : [
            {
              "system" : "http://loinc.org",
              "code" : "LA9633-4",
              "display" : "Present"
            }
          ]
        },
        "method" : {
          "coding" : [
            {
              "system" : "http://loinc.org",
              "code" : "LA26398-0",
              "display" : "Sequencing"
            }
          ]
        },
        "component" : [
          {
            "code" : {
              "coding" : [
                {
                  "system" : "http://loinc.org",
                  "code" : "48013-7",
                  "display" : "Genomic reference sequence [ID]"
                }
              ]
            },
            "valueCodeableConcept" : {
              "coding" : [
                {
                  "system" : "http://www.ncbi.nlm.nih.gov/refseq",
                  "code" : "NC_000023.10"
                }
              ]
            }
          },
          {
            "code" : {
              "coding" : [
                {
                  "system" : "http://loinc.org",
                  "code" : "92822-6",
                  "display" : "Genomic coordinate system [Type]"
                }
              ]
            },
            "valueCodeableConcept" : {
              "coding" : [
                {
                  "system" : "http://loinc.org",
                  "code" : "LA30102-0",
                  "display" : "1-based character counting"
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              ]
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          },
          {
            "code" : {
              "coding" : [
                {
                  "system" : "http://loinc.org",
                  "code" : "69547-8",
                  "display" : "Genomic ref allele [ID]"
                }
              ]
            },
            "valueString" : "T"
          },
          {
            "code" : {
              "coding" : [
                {
                  "system" : "http://loinc.org",
                  "code" : "69551-0",
                  "display" : "Genomic alt allele [ID]"
                }
              ]
            },
            "valueString" : "<DEL>"
          },
          {
            "code" : {
              "coding" : [
                {
                  "system" : "http://loinc.org",
                  "code" : "48019-4",
                  "display" : "DNA change type"
                }
              ]
            },
            "valueCodeableConcept" : {
              "coding" : [
                {
                  "system" : "http://www.sequenceontology.org",
                  "code" : "SO:0000159",
                  "display" : "deletion"
                }
              ]
            }
          },
          {
            "code" : {
              "coding" : [
                {
                  "system" : "http://loinc.org",
                  "code" : "81290-9",
                  "display" : "Genomic DNA change (gHGVS)"
                }
              ]
            },
            "valueCodeableConcept" : {
              "coding" : [
                {
                  "system" : "http://varnomen.hgvs.org",
                  "code" : "g.100652797_153792676del"
                }
              ]
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          },
          {
            "code" : {
              "coding" : [
                {
                  "system" : "http://loinc.org",
                  "code" : "53037-8",
                  "display" : "Genetic variation clinical significance [Imp]"
                }
              ]
            },
            "valueCodeableConcept" : {
              "text" : "Pathogenic"
            }
          },
          {
            "code" : {
              "coding" : [
                {
                  "system" : "http://loinc.org",
                  "code" : "81302-2",
                  "display" : "Structural variant inner start and end"
                }
              ]
            },
            "valueRange" : {
              "low" : {
                "value" : 100652796
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              "high" : {
                "value" : 153792676
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          },
          {
            "code" : {
              "coding" : [
                {
                  "system" : "http://loinc.org",
                  "code" : "81258-6",
                  "display" : "Sample variant allelic frequency"
                }
              ]
            },
            "valueQuantity" : {
              "value" : 0.33,
              "unit" : "decimal",
              "system" : "http://unitsofmeasure.org"
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}