NHS North West Genomics
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Document Details
Language: en
Profile: Bundle - FHIR Document
Final Document at 2026-07-14 15:59:16+0000 by NHS North West Genomics (Identifier: ODS Organisation Code/699X0) for Rob LEEDS Male, DoB: 1978-01-17 ( National Health Plan Identifier)
Document Subject
Rob LEEDS
NHS number: 9737383222
Date of birth: 1978-01-17
Sex: Male
Postcode: LS1 3EX
Document Content
PACKAGE: M4.14 - Non-Small Cell Lung Cancer, Multi-target ctDNA combined Multi-target NGS panel - small variant (EGFR, ALK, BRAF, KRAS, MET exon 14 skipping and copy number variations) and structural variant (ROS1, RET, ALK, NTRK1, NTRK2, NTRK3, MET exon (M4.14), requested by Leeds Teaching Hospitals NHS Trust.
Placer order number: 1234-RR8. Filler order number: T26-59X2.
Result: FAILURE. Reported by NHS North West Genomics, interpreted by Jonathan Edgerley.
Whole blood specimen
Received: 2026-07-06T00:00:00+00:00
| Gene | DNA change (c.HGVS) | Protein change (p.HGVS) | Change type | Zygosity | Classification |
|---|---|---|---|---|---|
| BRCA1 | NM_007294.3(BRCA1):c.68_69del | p.(Glu23ValfsTer17) | deletion | heterozygous | Pathogenic |
| FBN1 | NM_000138.4(FBN1):exon13_to_exon15del | - | copy_number_variation | - | Pathogenic |
| - | - | - | copy_number_variation | - | Pathogenic |
| - | - | - | deletion | - | Pathogenic |
Entry 2 - fullUrl = urn:uuid:84980fe1-25f9-43a9-bd28-3401796df680
Resource Patient:
Rob LEEDS
NHS number: 9737383222
Date of birth: 1978-01-17
Sex: Male
Postcode: LS1 3EX
Entry 3 - fullUrl = urn:uuid:ad34dc51-cc4e-407c-a003-276366ef9897
Resource Specimen:
Language: en
Profile: Specimen
status: Available
type: Whole blood specimen
subject: Rob LEEDS Male, DoB: 1978-01-17 ( National Health Plan Identifier)
receivedTime: 2026-07-06 00:00:00+0000
Entry 4 - fullUrl = urn:uuid:8f29ff05-48f2-4f1a-a8be-7022dda2b74a
Resource Encounter:
Language: en
identifier: Account number/SP26-01847
status: completed
class: observation encounter
subject: Rob LEEDS Male, DoB: 1978-01-17 ( National Health Plan Identifier)
Entry 5 - fullUrl = urn:uuid:b3bdaa63-3016-4115-97a4-e89f6f9731e0
Resource ServiceRequest:
Language: en
identifier: Placer Identifier/1234-RR8, Filler Identifier/T26-59X2
status: Completed
intent: Order
category: Molecular genetics procedure
code: No display for ServiceRequest.code (concept: Non-Small Cell Lung Cancer, Multi-target ctDNA combined Multi-target NGS panel - small variant (EGFR, ALK, BRAF, KRAS, MET exon 14 skipping and copy number variations) and structural variant (ROS1, RET, ALK, NTRK1, NTRK2, NTRK3, MET exon 14 skipping))
subject: Rob LEEDS Male, DoB: 1978-01-17 ( National Health Plan Identifier)
requester: Leeds Teaching Hospitals NHS Trust (Identifier: ODS Organisation Code/RR8)
specimen: Specimen: status = available; type = Whole blood specimen; receivedTime = 2026-07-06 00:00:00+0000
Entry 6 - fullUrl = urn:uuid:223a5b16-7751-44a3-a890-ac1d6085ade5
Resource Organization:
Language: en
identifier: ODS Organisation Code/699X0
name: NHS North West Genomics
Entry 7 - fullUrl = urn:uuid:4b8a115b-cd0a-487b-ac8e-5b9e4f4f78d4
Resource Binary:
Language: en
contentType: application/pdf
data:
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Entry 8 - fullUrl = urn:uuid:b412c3a9-d963-46b4-99d4-bb14f6065702
Resource DocumentReference:
Language: en
identifier: Filler Identifier/T26-59X2
status: Current
type: Genetic report
subject: Rob LEEDS Male, DoB: 1978-01-17 ( National Health Plan Identifier)
context
Encounter: identifier = Account number; status = finished; class = observation encounter (ActCode#OBSENC)date: 2026-07-14 15:59:16+0000
custodian: Identifier: ODS Organisation Code/699X0
content
Attachments
ContentType Url application/pdf Binary: application/pdf (845 bytes base64)
Entry 9 - fullUrl = urn:uuid:2032aa8f-abea-4f1e-8bc3-8db8cffca53a
Resource DiagnosticReport:
Language: en
Profiles: Diagnostic Report, Genomic Report
PACKAGE: M4.14 - Non-Small Cell Lung Cancer, Multi-target ctDNA combined Multi-target NGS panel - small variant (EGFR, ALK, BRAF, KRAS, MET exon 14 skipping and copy number variations) and structural variant (ROS1, RET, ALK, NTRK1, NTRK2, NTRK3, MET exon (Genetics)
Subject Rob LEEDS Male, DoB: 1978-01-17 ( National Health Plan Identifier) Relevant Time 2026-07-14 15:59:16+0000 Reported 2026-07-14 15:59:16+0000 Performer NHS North West Genomics (Identifier: ODS Organisation Code/699X0) Identifier Filler Identifier/T26-59X2 Presented Form application/pdf @ urn:uuid:4b8a115b-cd0a-487b-ac8e-5b9e4f4f78d4 Report Details
Code Value Flags Variables that apply to the overall study Final Genetic variant assessment Present Final Genetic variant assessment Present Final Genetic variant assessment Present Final Genetic variant assessment Present Final Coded Conclusions:
- FAILURE
Entry 10 - fullUrl = urn:uuid:23b67e47-926e-4382-957d-74cd2d715c57
Resource Observation:
Language: en
Profile: Genomic Study Panel
identifier: Filler Identifier/T26-59X2
status: Final
category: Laboratory, Genetics
code: Variables that apply to the overall study
subject: Rob LEEDS Male, DoB: 1978-01-17 ( National Health Plan Identifier)
effective: 2026-07-14 15:59:16+0000
component
code: Genetic disease assessed [ID]
value: Non-Small Cell Lung Cancer
component
code: Discrete variation analysis overall interpretation
value: FAILURE
Entry 11 - fullUrl = urn:uuid:f866eb21-c93b-4ea6-8e79-780149b39c6e
Resource Observation:
Language: en
Profiles: Variant, Observation
identifier: Filler Identifier/T26-59X2-1
status: Final
category: Laboratory, Genetics
code: Genetic variant assessment
subject: Rob LEEDS Male, DoB: 1978-01-17 ( National Health Plan Identifier)
effective: 2026-07-14 15:59:16+0000
performer: Organization NHS North West Genomics
value: Present
method: Sequencing
component
code: Gene studied [ID]
value: BRCA1
component
code: Genomic source class [Type]
value: Germline
component
code: Genomic reference sequence [ID]
value: NC_000017.10
component
code: Genomic coordinate system [Type]
value: 1-based character counting
component
code: Genomic ref allele [ID]
value: TCT
component
code: Genomic alt allele [ID]
value: T
component
code: DNA change type
value: deletion
component
code: Transcript reference sequence [ID]
value: NM_007294.3
component
code: DNA change (c.HGVS)
value: NM_007294.3(BRCA1):c.68_69del
component
code: Amino acid change (pHGVS)
value: p.(Glu23ValfsTer17)
component
code: Genomic DNA change (gHGVS)
value: g.41276047_41276048del
component
code: Genetic variation clinical significance [Imp]
value: Pathogenic
component
code: Origin of germline genetic variant [Type]
value: Maternal
component
code: Genomic allele start-end
value: 41276046-?
component
code: Sample variant allelic frequency
value: 0.33 decimal
component
code: Allelic state
value: heterozygous
Entry 12 - fullUrl = urn:uuid:2728faff-ad7c-40af-9f8d-475946d01157
Resource Observation:
Language: en
Profiles: Variant, Observation
identifier: Filler Identifier/T26-59X2-2
status: Final
category: Laboratory, Genetics
code: Genetic variant assessment
subject: Rob LEEDS Male, DoB: 1978-01-17 ( National Health Plan Identifier)
effective: 2026-07-14 15:59:16+0000
performer: Organization NHS North West Genomics
value: Present
method: Sequencing
component
code: Gene studied [ID]
value: FBN1
component
code: Genomic source class [Type]
value: Germline
component
code: Genomic reference sequence [ID]
value: NC_000015.9
component
code: Genomic coordinate system [Type]
value: 1-based character counting
component
code: Genomic ref allele [ID]
value: C
component
code: Genomic alt allele [ID]
value: <DEL>
component
code: DNA change type
value: copy_number_variation
component
code: Transcript reference sequence [ID]
value: NM_000138.4
component
code: DNA change (c.HGVS)
value: NM_000138.4(FBN1):exon13_to_exon15del
component
code: Genomic DNA change (gHGVS)
value: g.48797222_48802366del
component
code: Genetic variation clinical significance [Imp]
value: Pathogenic
component
code: Origin of germline genetic variant [Type]
value: Maternal
component
code: Structural variant inner start and end
value: 48797221-48802366
component
code: Sample variant allelic frequency
value: 0.33 decimal
component
code: Genomic structural variant copy number
value: 1 1 (Details: UCUM code1 = '1')
Entry 13 - fullUrl = urn:uuid:faf18f06-de32-49e1-8fb1-a8e87df23a51
Resource Observation:
Language: en
Profiles: Variant, Observation
identifier: Filler Identifier/T26-59X2-3
status: Final
category: Laboratory, Genetics
code: Genetic variant assessment
subject: Rob LEEDS Male, DoB: 1978-01-17 ( National Health Plan Identifier)
effective: 2026-07-14 15:59:16+0000
performer: Organization NHS North West Genomics
value: Present
method: Sequencing
component
code: Genomic source class [Type]
value: Germline
component
code: Genomic reference sequence [ID]
value: NC_000023.10
component
code: Genomic coordinate system [Type]
value: 1-based character counting
component
code: Genomic ref allele [ID]
value: T
component
code: Genomic alt allele [ID]
value: <DEL>
component
code: DNA change type
value: copy_number_variation
component
code: Genomic DNA change (gHGVS)
value: g.100652797_153792676del
component
code: Cytogenetic (chromosome) location
value: Xq22.1-q28
component
code: Genetic variation clinical significance [Imp]
value: Pathogenic
component
code: Origin of germline genetic variant [Type]
value: Maternal
component
code: Structural variant inner start and end
value: 100652796-153792676
component
code: Sample variant allelic frequency
value: 0.33 decimal
component
code: Genomic structural variant copy number
value: 1 1 (Details: UCUM code1 = '1')
Entry 14 - fullUrl = urn:uuid:7f70a970-2deb-47c6-9b4d-a252bda6bdd6
Resource Observation:
Language: en
Profiles: Variant, Observation
identifier: Filler Identifier/T26-59X2-4
status: Final
category: Laboratory, Genetics
code: Genetic variant assessment
subject: Rob LEEDS Male, DoB: 1978-01-17 ( National Health Plan Identifier)
effective: 2026-07-14 15:59:16+0000
performer: Organization NHS North West Genomics
value: Present
method: Sequencing
component
code: Genomic reference sequence [ID]
value: NC_000023.10
component
code: Genomic coordinate system [Type]
value: 1-based character counting
component
code: Genomic ref allele [ID]
value: T
component
code: Genomic alt allele [ID]
value: <DEL>
component
code: DNA change type
value: deletion
component
code: Genomic DNA change (gHGVS)
value: g.100652797_153792676del
component
code: Genetic variation clinical significance [Imp]
value: Pathogenic
component
code: Structural variant inner start and end
value: 100652796-153792676
component
code: Sample variant allelic frequency
value: 0.33 decimal