NHS North West Genomics
2.1.4 - ci-build United Kingdom flag

NHS North West Genomics - Local Development build (v2.1.4) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

ServiceRequest Introduction

Reference

Domain Archetype

Genomic Laboratory OrderDiagnostic OrderPatient DemographicsIdentificationNHS IdentifierIdentificationMedical Record NumberName, date of birth, post code, etc.Hospital SpellCase identification / Account NumberHospital Provider Spell IdentifierService TypeServiceOrder DetailsOrder Identifier (Placer)Filler Order NumberOrder Group NumberOrdering FacilityOrganisation CodeOrdering PractitionerReason CodeGene disease assessedClinical Indication(Order) Procedure CodeGenomic Test CodeTest Directory CodeNotesOrder Entry QuestionsGenomic(Supporting Information)ConsentPregnantConsanguineous unionSpecimenSpecimen IdAccession NumberShipment Tracking number

Genomic Test Order Sections


Diagnostic Order

Order Test Form - Data Extraction Overview

Order Test Form - Data Extraction Overview


The FHIR exchange style used FHIR Message following laboratory-order message definition. This definition is based on HL7 v2 OML_O21 Laboratory Order which simplifies conversion to/from pipe+hat (v2) and json (FHIR) formats.

At present, the NW GLH Laboratory Information Management System (LIMS) will not support HL7 FHIR. The Regional Integration Exchange (RIE) will perform conversion between v2 and FHIR formats.

This message is an aggregate (DDD)/archetype and so is a collection of FHIR Resources (similar to v2 segements) which is described in Genomic Test Order.

Communicating Ask at Order Entry questions and prior results

See also HL7 Europe Laboratory Report - ServiceRequest This message can be extended by template (FHIR Questionnaire) which allows the definition of additional questions to be defined for the laboratory order.

The detail of this form/template defines:

Order Test Form Example (extract)

Order Text Form Example (extract)


Question CodeSystem Code FHIR Profile HL7 v2 Segment FHIR Questionniare
item.type
FHIR Observation
value[x]
v2 OBX-2
Does This Test Relate to a Pregnancy SNOMED 77386006 Observation OBX boolean valueBoolean CE (code 0136)
Sample LOINC 68992-7 Observation-Panel OBR      
High Infection Risk Sample SNOMED 281269004 Observation OBX boolean valueBoolean CE (code 0136)

It is not expected the NW GLH Laboratory Information Management System (LIMS) will support UK SNOMED CT, and the RIE will handle the conversion either internally using FHIR ConceptMap or a terminology service with the following capabilities IHE Sharing Valuesets, Codes, and Maps (SVCM)

Patient Demographics

Name Value Set / Data Type Cardinality HL7 v2 OML_O21 Message HL7 FHIR ServiceRequest HL7 FHIR Resource (Message + RESTful)
NHS Number NHS Number 0..1 PID-3 ServiceRequest.subject.identifier Patient.identifier[nhsNumber]
Medical Record Number Medical Record Number 0..1 PID-3 if NHS Number not present ServiceRequest.subject.identifier Patient.identifier[MedicalRecordNumber]
Date of Birth Date of Birth 0..1 PID-7   Patient.birthDate
Postcode Postcode 0..1 PID-11   Patient.address.postalCode

Hospital Spell

Treat as mandatory for reflex or subcontracted orders.

Name Value Set / Data Type Cardinality HL7 v2 OML_O21 Message HL7 FHIR ServiceRequest HL7 FHIR Resource (Message + RESTful)
Hospital Service Service 0..1 PV1-10   Encounter.serviceType
Case Identification or Account Number HospitalProviderSpellIdentifier 0..1 PV1-19 ServiceRequest.encounter.identifier Encounter.identifier HospitalSpell

Diagnostic Workflow

Name Value Set / Data Type Cardinality HL7 v2 OML_O21 Message HL7 FHIR ServiceRequest
Order Identifier (Placer) Order Identifier 1..1 ORC-2 ServiceRequest.identifier[OrderIdentifier]
Filler Order Number   0..1 ORC-3 ServiceRequest.identifier[OrderFillerNumber]
(Placer) Order Group Number Order Group Number 0..1 ORC-4 ServiceRequest.requisition.identifier
(Order) Procedure Code Diagnostic Domain specific - See below 1..1 OBR-4 ServiceRequest.code
Order date   0..1 ORC-9 ServiceRequest.authoredOn
Ordering Practitioner England Practitioner Identifier 0..1 ORC-12 ServiceRequest.requester[PractitionerRole]
Ordering Facility Organisation Code 1..1 ORC-21 If Order has requesting practitioner ServiceRequest.requester[PractitionerRole]
else ServiceRequest.requester[Organization]
performer Organisation Code 0..1 implied by destination of message ServiceRequest.performer
Suspected Condition Domain specific - See below (Generally SNOMED Condition code) .. DG1-3 ServiceRequest.reasonCode
Supporting Information Domain specific - See below 0..* OBX ServiceRequest.supportingInformation
Notes   0..* NTE ServiceRequest.note
Specimen See Specimen below 0..* SPM ServiceRequest.specimen.identifier

Diagnostic Genomics

Name Value Set / Data Type Cardinality HL7 v2 OML_O21 Message HL7 FHIR ServiceRequest
(Order) Procedure Code - Genomic Test Code Genomic Test Directory 1..1 OBR-4 ServiceRequest.code

Order Entry Questions

Specimen

Name LOINC Value Set / Data Type Cardinality HL7 v2 OML_O21 Message HL7 FHIR ServiceRequest
Specimen ID 80398-1   0..*   ServiceRequest.specimen

Note: it is likely that source systems will use ORM_01 and not include specimen details. In this case it is suggested that the specimen details are captured as 'Ask at Order Entry Questions' and so provided as OBX segments.